Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VMP1Q96GC9 TREML5P-201ENST00000421694 576 ntBASIC15.09■□□□□ 0.01
VMP1Q96GC9 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VMP1Q96GC9 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC15.09■□□□□ 0.01
VMP1Q96GC9 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.09■□□□□ 0.01
VMP1Q96GC9 IGHV3-42-201ENST00000520410 361 ntBASIC15.09■□□□□ 0.01
VMP1Q96GC9 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VMP1Q96GC9 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.09■□□□□ 0.01
VMP1Q96GC9 NAA38-207ENST00000576861 556 ntTSL 3 BASIC15.09■□□□□ 0.01
VMP1Q96GC9 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC15.09■□□□□ 0.01
VMP1Q96GC9 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC15.09■□□□□ 0.01
VMP1Q96GC9 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC15.09■□□□□ 0.01
VMP1Q96GC9 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.09■□□□□ 0.01
VMP1Q96GC9 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC15.09■□□□□ 0.01
VMP1Q96GC9 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VMP1Q96GC9 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VMP1Q96GC9 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VMP1Q96GC9 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VMP1Q96GC9 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VMP1Q96GC9 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC15.09■□□□□ 0.01
VMP1Q96GC9 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VMP1Q96GC9 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VMP1Q96GC9 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.09■□□□□ 0.01
VMP1Q96GC9 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC15.09■□□□□ 0.01
VMP1Q96GC9 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
VMP1Q96GC9 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.09■□□□□ 0.01
VMP1Q96GC9 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
VMP1Q96GC9 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
VMP1Q96GC9 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC15.09■□□□□ 0.01
VMP1Q96GC9 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
VMP1Q96GC9 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VMP1Q96GC9 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC15.09■□□□□ 0.01
VMP1Q96GC9 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0.01
VMP1Q96GC9 BANP-203ENST00000393207 2438 ntTSL 2 BASIC15.08■□□□□ 0.01
VMP1Q96GC9 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.08■□□□□ 0.01
VMP1Q96GC9 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC15.08■□□□□ 0.01
VMP1Q96GC9 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
VMP1Q96GC9 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
VMP1Q96GC9 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC15.08■□□□□ 0.01
VMP1Q96GC9 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
VMP1Q96GC9 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.08■□□□□ 0
VMP1Q96GC9 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC15.08■□□□□ 0
VMP1Q96GC9 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC15.08■□□□□ 0
VMP1Q96GC9 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.08■□□□□ 0
VMP1Q96GC9 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.08■□□□□ 0
VMP1Q96GC9 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
VMP1Q96GC9 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
VMP1Q96GC9 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
VMP1Q96GC9 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
VMP1Q96GC9 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.08■□□□□ 0
VMP1Q96GC9 SYS1-203ENST00000414310 795 ntTSL 3 BASIC15.08■□□□□ 0
VMP1Q96GC9 AC055876.3-201ENST00000431496 288 ntBASIC15.08■□□□□ 0
VMP1Q96GC9 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC15.08■□□□□ 0
VMP1Q96GC9 MTND6P24-201ENST00000440466 518 ntBASIC15.08■□□□□ 0
VMP1Q96GC9 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC15.08■□□□□ 0
VMP1Q96GC9 AC138649.4-201ENST00000612222 287 ntBASIC15.08■□□□□ 0
VMP1Q96GC9 AC073592.8-201ENST00000624126 511 ntBASIC15.08■□□□□ 0
VMP1Q96GC9 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.08■□□□□ 0
VMP1Q96GC9 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC15.08■□□□□ 0
VMP1Q96GC9 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC15.08■□□□□ 0
VMP1Q96GC9 LCK-206ENST00000373564 2137 ntTSL 5 BASIC15.08■□□□□ 0
VMP1Q96GC9 FO538757.1-201ENST00000623083 1397 ntBASIC15.08■□□□□ 0
VMP1Q96GC9 REXO1L8P-201ENST00000604378 1897 ntBASIC15.08■□□□□ 0
VMP1Q96GC9 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC15.07■□□□□ 0
VMP1Q96GC9 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
VMP1Q96GC9 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VMP1Q96GC9 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC15.07■□□□□ 0
VMP1Q96GC9 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
VMP1Q96GC9 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VMP1Q96GC9 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.07■□□□□ 0
VMP1Q96GC9 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC15.07■□□□□ 0
VMP1Q96GC9 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VMP1Q96GC9 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
VMP1Q96GC9 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VMP1Q96GC9 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
VMP1Q96GC9 RPS19-201ENST00000221975 500 ntTSL 3 BASIC15.07■□□□□ 0
VMP1Q96GC9 HMGN1P19-201ENST00000436976 333 ntBASIC15.07■□□□□ 0
VMP1Q96GC9 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VMP1Q96GC9 AC245100.5-201ENST00000452108 331 ntBASIC15.07■□□□□ 0
VMP1Q96GC9 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VMP1Q96GC9 SATB1-217ENST00000493952 626 ntTSL 3 BASIC15.07■□□□□ 0
VMP1Q96GC9 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC15.07■□□□□ 0
VMP1Q96GC9 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC15.07■□□□□ 0
VMP1Q96GC9 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC15.07■□□□□ 0
VMP1Q96GC9 DUT-210ENST00000559935 569 ntTSL 3 BASIC15.07■□□□□ 0
VMP1Q96GC9 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC15.07■□□□□ 0
VMP1Q96GC9 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.07■□□□□ 0
VMP1Q96GC9 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC15.07■□□□□ 0
VMP1Q96GC9 AC005498.2-205ENST00000593218 784 ntBASIC15.07■□□□□ 0
VMP1Q96GC9 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
VMP1Q96GC9 AC011467.4-201ENST00000594891 528 ntBASIC15.07■□□□□ 0
VMP1Q96GC9 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC15.07■□□□□ 0
VMP1Q96GC9 RN7SL828P-201ENST00000607615 303 ntBASIC15.07■□□□□ 0
VMP1Q96GC9 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
VMP1Q96GC9 GPER1-207ENST00000619052 571 ntTSL 2 BASIC15.07■□□□□ 0
VMP1Q96GC9 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
VMP1Q96GC9 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.07■□□□□ 0
VMP1Q96GC9 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
VMP1Q96GC9 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.07■□□□□ 0
VMP1Q96GC9 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms