Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC60Q8IWA6 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CCDC60Q8IWA6 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC60Q8IWA6 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC60Q8IWA6 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC17.31■□□□□ 0.36
CCDC60Q8IWA6 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC60Q8IWA6 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CCDC60Q8IWA6 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC60Q8IWA6 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 AC105250.1-201ENST00000509378 2057 ntBASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 AC092933.1-201ENST00000393644 945 ntBASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 PFN2-205ENST00000461868 613 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 AC022137.2-201ENST00000503482 481 ntBASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC60Q8IWA6 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 MIR6752-201ENST00000618442 71 ntBASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CCDC60Q8IWA6 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 WARS-232ENST00000556645 2508 ntTSL 5 BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 DKFZP434H168-201ENST00000567381 1905 ntBASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 LBX2-201ENST00000341396 886 ntTSL 3 BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 ACKR1-201ENST00000368121 1240 ntBASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 BOLA2P3-201ENST00000404566 256 ntBASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC17.28■□□□□ 0.36
CCDC60Q8IWA6 AL355864.2-201ENST00000447420 863 ntBASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms