Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 AC020658.6-201ENST00000623564 1870 ntBASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 AC074338.1-201ENST00000416825 156 ntBASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 RPL13P2-201ENST00000440687 659 ntBASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 MEIS3P1-201ENST00000495167 958 ntBASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 RN7SL204P-201ENST00000582831 262 ntBASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 AC008761.3-201ENST00000624803 892 ntBASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
NUP54Q7Z3B4 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 TOMM22P5-201ENST00000416399 439 ntBASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 AC015922.1-201ENST00000421102 1152 ntBASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 AC002472.2-201ENST00000442739 958 ntBASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 OARD1-208ENST00000469104 704 ntTSL 2 BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 SLED1-202ENST00000512051 380 ntBASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 DOC2GP-202ENST00000514950 1163 ntBASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 CMC2-214ENST00000565925 640 ntTSL 5 BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 LINC01115-203ENST00000606068 577 ntBASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 AC104640.1-201ENST00000562617 2109 ntBASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NUP54Q7Z3B4 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 PRAL-201ENST00000624952 3286 ntBASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms