Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 SLC16A6P1-201ENST00000413214 1059 ntBASIC18.01■□□□□ 0.47
CTCFP49711 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC18.01■□□□□ 0.47
CTCFP49711 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC18.01■□□□□ 0.47
CTCFP49711 EEF1DP4-201ENST00000446006 880 ntBASIC18.01■□□□□ 0.47
CTCFP49711 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC18.01■□□□□ 0.47
CTCFP49711 REEP5-205ENST00000504247 480 ntTSL 5 BASIC18.01■□□□□ 0.47
CTCFP49711 AC116345.2-201ENST00000512837 523 ntBASIC18.01■□□□□ 0.47
CTCFP49711 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC18.01■□□□□ 0.47
CTCFP49711 AC012158.2-201ENST00000536546 354 ntBASIC18.01■□□□□ 0.47
CTCFP49711 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC18.01■□□□□ 0.47
CTCFP49711 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC18.01■□□□□ 0.47
CTCFP49711 AC103988.2-201ENST00000561804 725 ntBASIC18.01■□□□□ 0.47
CTCFP49711 MIR4649-201ENST00000582839 64 ntBASIC18.01■□□□□ 0.47
CTCFP49711 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC18.01■□□□□ 0.47
CTCFP49711 AL023803.2-201ENST00000620080 638 ntBASIC18.01■□□□□ 0.47
CTCFP49711 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTCFP49711 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CTCFP49711 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CTCFP49711 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CTCFP49711 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTCFP49711 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTCFP49711 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC18.01■□□□□ 0.47
CTCFP49711 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTCFP49711 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC18.01■□□□□ 0.47
CTCFP49711 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC18.01■□□□□ 0.47
CTCFP49711 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CTCFP49711 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC18.01■□□□□ 0.47
CTCFP49711 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
CTCFP49711 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTCFP49711 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTCFP49711 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC18.01■□□□□ 0.47
CTCFP49711 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTCFP49711 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC18.01■□□□□ 0.47
CTCFP49711 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
CTCFP49711 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC18■□□□□ 0.47
CTCFP49711 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC18■□□□□ 0.47
CTCFP49711 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CTCFP49711 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
CTCFP49711 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC18■□□□□ 0.47
CTCFP49711 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTCFP49711 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CTCFP49711 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC18■□□□□ 0.47
CTCFP49711 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC18■□□□□ 0.47
CTCFP49711 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC18■□□□□ 0.47
CTCFP49711 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTCFP49711 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC18■□□□□ 0.47
CTCFP49711 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTCFP49711 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTCFP49711 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC18■□□□□ 0.47
CTCFP49711 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTCFP49711 HPGD-203ENST00000422112 805 ntTSL 2 BASIC18■□□□□ 0.47
CTCFP49711 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CTCFP49711 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC18■□□□□ 0.47
CTCFP49711 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC18■□□□□ 0.47
CTCFP49711 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC18■□□□□ 0.47
CTCFP49711 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC18■□□□□ 0.47
CTCFP49711 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTCFP49711 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTCFP49711 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CTCFP49711 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTCFP49711 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTCFP49711 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CTCFP49711 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
CTCFP49711 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC18■□□□□ 0.47
CTCFP49711 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC18■□□□□ 0.47
CTCFP49711 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC18■□□□□ 0.47
CTCFP49711 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC18■□□□□ 0.47
CTCFP49711 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTCFP49711 AC060834.1-201ENST00000443027 2032 ntBASIC17.99■□□□□ 0.47
CTCFP49711 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CTCFP49711 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTCFP49711 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CTCFP49711 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC17.99■□□□□ 0.47
CTCFP49711 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTCFP49711 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTCFP49711 RELA-227ENST00000615805 2236 ntTSL 5 BASIC17.99■□□□□ 0.47
CTCFP49711 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
CTCFP49711 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTCFP49711 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTCFP49711 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTCFP49711 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
CTCFP49711 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTCFP49711 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTCFP49711 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC17.99■□□□□ 0.47
CTCFP49711 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTCFP49711 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTCFP49711 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CTCFP49711 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC17.99■□□□□ 0.47
CTCFP49711 RPS9P1-201ENST00000419943 583 ntBASIC17.99■□□□□ 0.47
CTCFP49711 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CTCFP49711 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC17.99■□□□□ 0.47
CTCFP49711 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC17.99■□□□□ 0.47
CTCFP49711 RBM8B-201ENST00000555532 525 ntBASIC17.99■□□□□ 0.47
CTCFP49711 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC17.99■□□□□ 0.47
CTCFP49711 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC17.99■□□□□ 0.47
CTCFP49711 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC17.99■□□□□ 0.47
CTCFP49711 AC107373.2-201ENST00000607735 490 ntBASIC17.99■□□□□ 0.47
CTCFP49711 MIR6842-201ENST00000612539 65 ntBASIC17.99■□□□□ 0.47
CTCFP49711 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC17.99■□□□□ 0.47
CTCFP49711 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms