Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CR1P49238 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CR1P49238 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CR1P49238 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CR1P49238 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CR1P49238 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CR1P49238 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CR1P49238 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CR1P49238 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC13.83□□□□□ -0.2
CX3CR1P49238 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CR1P49238 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CR1P49238 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CR1P49238 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC13.83□□□□□ -0.2
CX3CR1P49238 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CR1P49238 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CR1P49238 C18orf15-201ENST00000623680 2534 ntBASIC13.83□□□□□ -0.2
CX3CR1P49238 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CR1P49238 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CR1P49238 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CR1P49238 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CR1P49238 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CR1P49238 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CR1P49238 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CR1P49238 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CR1P49238 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CR1P49238 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CR1P49238 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC13.82□□□□□ -0.2
CX3CR1P49238 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC13.82□□□□□ -0.2
CX3CR1P49238 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
CX3CR1P49238 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
CX3CR1P49238 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CR1P49238 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CR1P49238 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CR1P49238 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
CX3CR1P49238 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CR1P49238 AZGP1P1-201ENST00000411909 902 ntBASIC13.82□□□□□ -0.2
CX3CR1P49238 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC13.82□□□□□ -0.2
CX3CR1P49238 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC13.82□□□□□ -0.2
CX3CR1P49238 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC13.82□□□□□ -0.2
CX3CR1P49238 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC13.82□□□□□ -0.2
CX3CR1P49238 GATD1-206ENST00000526325 756 ntTSL 5 BASIC13.82□□□□□ -0.2
CX3CR1P49238 AC093520.2-201ENST00000561830 333 ntBASIC13.82□□□□□ -0.2
CX3CR1P49238 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CR1P49238 AC004835.2-201ENST00000603762 682 ntBASIC13.82□□□□□ -0.2
CX3CR1P49238 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CR1P49238 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CR1P49238 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC13.82□□□□□ -0.2
CX3CR1P49238 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CR1P49238 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CR1P49238 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
CX3CR1P49238 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CR1P49238 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CR1P49238 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CR1P49238 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
CX3CR1P49238 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CR1P49238 AC112693.3-201ENST00000624819 1983 ntBASIC13.82□□□□□ -0.2
CX3CR1P49238 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CR1P49238 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CR1P49238 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CR1P49238 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CR1P49238 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CR1P49238 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CR1P49238 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CR1P49238 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CX3CR1P49238 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CR1P49238 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CR1P49238 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
CX3CR1P49238 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CX3CR1P49238 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CR1P49238 RBM39-205ENST00000397370 612 ntTSL 2 BASIC13.81□□□□□ -0.2
CX3CR1P49238 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC13.81□□□□□ -0.2
CX3CR1P49238 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
CX3CR1P49238 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CR1P49238 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC13.81□□□□□ -0.2
CX3CR1P49238 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC13.81□□□□□ -0.2
CX3CR1P49238 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC13.81□□□□□ -0.2
CX3CR1P49238 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
CX3CR1P49238 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC13.81□□□□□ -0.2
CX3CR1P49238 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC13.81□□□□□ -0.2
CX3CR1P49238 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CX3CR1P49238 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CR1P49238 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC13.81□□□□□ -0.2
CX3CR1P49238 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC13.81□□□□□ -0.2
CX3CR1P49238 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CX3CR1P49238 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC13.81□□□□□ -0.2
CX3CR1P49238 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
CX3CR1P49238 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CR1P49238 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CR1P49238 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC13.81□□□□□ -0.2
CX3CR1P49238 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CR1P49238 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CR1P49238 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CR1P49238 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CR1P49238 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC13.81□□□□□ -0.2
CX3CR1P49238 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CR1P49238 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CR1P49238 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CR1P49238 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CR1P49238 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CR1P49238 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms