Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
MSX2P35548 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
MSX2P35548 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
MSX2P35548 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.02□□□□□ -0.01
MSX2P35548 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC15.02□□□□□ -0.01
MSX2P35548 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
MSX2P35548 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC15.02□□□□□ -0.01
MSX2P35548 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
MSX2P35548 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
MSX2P35548 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
MSX2P35548 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
MSX2P35548 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC15.02□□□□□ -0.01
MSX2P35548 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
MSX2P35548 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
MSX2P35548 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
MSX2P35548 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.02□□□□□ -0.01
MSX2P35548 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
MSX2P35548 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
MSX2P35548 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.02□□□□□ -0.01
MSX2P35548 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
MSX2P35548 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
MSX2P35548 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX2P35548 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX2P35548 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX2P35548 AL691432.1-201ENST00000596308 1422 ntBASIC15.01□□□□□ -0.01
MSX2P35548 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX2P35548 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX2P35548 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
MSX2P35548 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX2P35548 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX2P35548 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX2P35548 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX2P35548 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
MSX2P35548 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC15.01□□□□□ -0.01
MSX2P35548 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX2P35548 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX2P35548 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX2P35548 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX2P35548 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX2P35548 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX2P35548 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC15.01□□□□□ -0.01
MSX2P35548 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
MSX2P35548 DDT-204ENST00000404092 805 ntTSL 3 BASIC15.01□□□□□ -0.01
MSX2P35548 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC15.01□□□□□ -0.01
MSX2P35548 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.01□□□□□ -0.01
MSX2P35548 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
MSX2P35548 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
MSX2P35548 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX2P35548 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC15.01□□□□□ -0.01
MSX2P35548 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC15.01□□□□□ -0.01
MSX2P35548 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC15.01□□□□□ -0.01
MSX2P35548 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC15.01□□□□□ -0.01
MSX2P35548 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC15.01□□□□□ -0.01
MSX2P35548 AC091304.2-201ENST00000564639 760 ntBASIC15.01□□□□□ -0.01
MSX2P35548 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.01□□□□□ -0.01
MSX2P35548 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.01□□□□□ -0.01
MSX2P35548 RMI2-205ENST00000576027 818 ntTSL 2 BASIC15.01□□□□□ -0.01
MSX2P35548 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC15.01□□□□□ -0.01
MSX2P35548 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX2P35548 AL009183.1-201ENST00000603760 355 ntBASIC15.01□□□□□ -0.01
MSX2P35548 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC15.01□□□□□ -0.01
MSX2P35548 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX2P35548 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
MSX2P35548 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
MSX2P35548 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC15.01□□□□□ -0.01
MSX2P35548 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
MSX2P35548 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.01□□□□□ -0.01
MSX2P35548 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX2P35548 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX2P35548 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX2P35548 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
MSX2P35548 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX2P35548 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX2P35548 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
MSX2P35548 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC15.01□□□□□ -0.01
MSX2P35548 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MSX2P35548 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
MSX2P35548 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC15.01□□□□□ -0.01
MSX2P35548 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
MSX2P35548 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC15□□□□□ -0.01
MSX2P35548 MTHFR-210ENST00000641407 2387 ntBASIC15□□□□□ -0.01
MSX2P35548 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MSX2P35548 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC15□□□□□ -0.01
MSX2P35548 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC15□□□□□ -0.01
MSX2P35548 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MSX2P35548 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MSX2P35548 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MSX2P35548 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
MSX2P35548 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC15□□□□□ -0.01
MSX2P35548 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MSX2P35548 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MSX2P35548 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MSX2P35548 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15□□□□□ -0.01
MSX2P35548 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC15□□□□□ -0.01
MSX2P35548 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC15□□□□□ -0.01
MSX2P35548 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MSX2P35548 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC15□□□□□ -0.01
MSX2P35548 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MSX2P35548 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
MSX2P35548 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms