Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
CIITAP33076 ACTG1P3-201ENST00000431775 1114 ntBASIC17.53■□□□□ 0.4
CIITAP33076 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CIITAP33076 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC17.53■□□□□ 0.4
CIITAP33076 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC17.53■□□□□ 0.4
CIITAP33076 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC17.53■□□□□ 0.4
CIITAP33076 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC17.53■□□□□ 0.4
CIITAP33076 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC17.53■□□□□ 0.4
CIITAP33076 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CIITAP33076 AC005252.2-201ENST00000624630 1141 ntBASIC17.53■□□□□ 0.4
CIITAP33076 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC17.53■□□□□ 0.4
CIITAP33076 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC17.53■□□□□ 0.4
CIITAP33076 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CIITAP33076 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CIITAP33076 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CIITAP33076 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.53■□□□□ 0.4
CIITAP33076 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CIITAP33076 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CIITAP33076 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC17.53■□□□□ 0.4
CIITAP33076 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CIITAP33076 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
CIITAP33076 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC17.52■□□□□ 0.4
CIITAP33076 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC17.52■□□□□ 0.4
CIITAP33076 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CIITAP33076 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.52■□□□□ 0.4
CIITAP33076 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CIITAP33076 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CIITAP33076 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CIITAP33076 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CIITAP33076 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
CIITAP33076 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC17.52■□□□□ 0.4
CIITAP33076 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC17.52■□□□□ 0.4
CIITAP33076 AC105917.1-201ENST00000506637 2539 ntBASIC17.52■□□□□ 0.4
CIITAP33076 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CIITAP33076 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CIITAP33076 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CIITAP33076 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
CIITAP33076 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
CIITAP33076 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CIITAP33076 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CIITAP33076 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC17.52■□□□□ 0.4
CIITAP33076 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.4
CIITAP33076 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CIITAP33076 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
CIITAP33076 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CIITAP33076 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
CIITAP33076 AC007389.4-201ENST00000454674 793 ntBASIC17.52■□□□□ 0.4
CIITAP33076 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CIITAP33076 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
CIITAP33076 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC17.52■□□□□ 0.4
CIITAP33076 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC17.52■□□□□ 0.4
CIITAP33076 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CIITAP33076 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CIITAP33076 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CIITAP33076 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC17.52■□□□□ 0.4
CIITAP33076 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CIITAP33076 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC17.52■□□□□ 0.39
CIITAP33076 BID-213ENST00000615414 2236 ntTSL 5 BASIC17.52■□□□□ 0.39
CIITAP33076 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
CIITAP33076 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CIITAP33076 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC17.52■□□□□ 0.39
CIITAP33076 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC17.52■□□□□ 0.39
CIITAP33076 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
CIITAP33076 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CIITAP33076 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CIITAP33076 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CIITAP33076 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CIITAP33076 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
CIITAP33076 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC17.52■□□□□ 0.39
CIITAP33076 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC17.52■□□□□ 0.39
CIITAP33076 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CIITAP33076 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC17.51■□□□□ 0.39
CIITAP33076 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
CIITAP33076 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CIITAP33076 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CIITAP33076 AC093525.8-201ENST00000624099 1342 ntBASIC17.51■□□□□ 0.39
CIITAP33076 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC17.51■□□□□ 0.39
CIITAP33076 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CIITAP33076 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CIITAP33076 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CIITAP33076 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CIITAP33076 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CIITAP33076 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CIITAP33076 ACKR1-201ENST00000368121 1240 ntBASIC17.51■□□□□ 0.39
CIITAP33076 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CIITAP33076 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
CIITAP33076 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CIITAP33076 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC17.51■□□□□ 0.39
CIITAP33076 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC17.51■□□□□ 0.39
CIITAP33076 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC17.51■□□□□ 0.39
CIITAP33076 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CIITAP33076 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC17.51■□□□□ 0.39
CIITAP33076 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CIITAP33076 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CIITAP33076 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC17.51■□□□□ 0.39
CIITAP33076 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CIITAP33076 IFT20-206ENST00000578122 834 ntTSL 2 BASIC17.51■□□□□ 0.39
CIITAP33076 IFT20-208ENST00000578985 831 ntTSL 3 BASIC17.51■□□□□ 0.39
CIITAP33076 AC010319.3-201ENST00000597028 470 ntBASIC17.51■□□□□ 0.39
CIITAP33076 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms