Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC12.01□□□□□ -0.49
HLA-DMBP28068 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DMBP28068 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DMBP28068 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
HLA-DMBP28068 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC12.01□□□□□ -0.49
HLA-DMBP28068 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC12.01□□□□□ -0.49
HLA-DMBP28068 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC12.01□□□□□ -0.49
HLA-DMBP28068 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DMBP28068 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
HLA-DMBP28068 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
HLA-DMBP28068 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC12.01□□□□□ -0.49
HLA-DMBP28068 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC12.01□□□□□ -0.49
HLA-DMBP28068 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DMBP28068 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DMBP28068 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DMBP28068 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
HLA-DMBP28068 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DMBP28068 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC12.01□□□□□ -0.49
HLA-DMBP28068 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DMBP28068 CYP4F24P-201ENST00000586049 1580 ntBASIC12.01□□□□□ -0.49
HLA-DMBP28068 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
HLA-DMBP28068 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC12□□□□□ -0.49
HLA-DMBP28068 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DMBP28068 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DMBP28068 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DMBP28068 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DMBP28068 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DMBP28068 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC12□□□□□ -0.49
HLA-DMBP28068 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC12□□□□□ -0.49
HLA-DMBP28068 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
HLA-DMBP28068 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC12□□□□□ -0.49
HLA-DMBP28068 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
HLA-DMBP28068 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DMBP28068 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
HLA-DMBP28068 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC12□□□□□ -0.49
HLA-DMBP28068 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC12□□□□□ -0.49
HLA-DMBP28068 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DMBP28068 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC12□□□□□ -0.49
HLA-DMBP28068 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
HLA-DMBP28068 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC12□□□□□ -0.49
HLA-DMBP28068 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DMBP28068 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DMBP28068 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
HLA-DMBP28068 AC004987.2-201ENST00000395959 1148 ntBASIC12□□□□□ -0.49
HLA-DMBP28068 METTL21AP1-201ENST00000438852 635 ntBASIC12□□□□□ -0.49
HLA-DMBP28068 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC12□□□□□ -0.49
HLA-DMBP28068 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC12□□□□□ -0.49
HLA-DMBP28068 AC079140.1-201ENST00000508039 487 ntBASIC12□□□□□ -0.49
HLA-DMBP28068 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC12□□□□□ -0.49
HLA-DMBP28068 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC12□□□□□ -0.49
HLA-DMBP28068 AC026120.1-201ENST00000611536 926 ntBASIC12□□□□□ -0.49
HLA-DMBP28068 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DMBP28068 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
HLA-DMBP28068 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC12□□□□□ -0.49
HLA-DMBP28068 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC12□□□□□ -0.49
HLA-DMBP28068 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DMBP28068 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC12□□□□□ -0.49
HLA-DMBP28068 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DMBP28068 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC12□□□□□ -0.49
HLA-DMBP28068 UXT-AS1-201ENST00000590504 1525 ntBASIC12□□□□□ -0.49
HLA-DMBP28068 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DMBP28068 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DMBP28068 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC12□□□□□ -0.49
HLA-DMBP28068 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC12□□□□□ -0.49
HLA-DMBP28068 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
HLA-DMBP28068 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC12□□□□□ -0.49
HLA-DMBP28068 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC12□□□□□ -0.49
HLA-DMBP28068 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
HLA-DMBP28068 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC12□□□□□ -0.49
HLA-DMBP28068 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
HLA-DMBP28068 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC12□□□□□ -0.49
HLA-DMBP28068 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC12□□□□□ -0.49
HLA-DMBP28068 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DMBP28068 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DMBP28068 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DMBP28068 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC11.99□□□□□ -0.49
HLA-DMBP28068 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DMBP28068 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DMBP28068 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DMBP28068 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DMBP28068 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DMBP28068 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
HLA-DMBP28068 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC11.99□□□□□ -0.49
HLA-DMBP28068 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC11.99□□□□□ -0.49
HLA-DMBP28068 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DMBP28068 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DMBP28068 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DMBP28068 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC11.99□□□□□ -0.49
HLA-DMBP28068 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC11.99□□□□□ -0.49
HLA-DMBP28068 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC11.99□□□□□ -0.49
HLA-DMBP28068 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC11.99□□□□□ -0.49
HLA-DMBP28068 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DMBP28068 FAM220BP-201ENST00000377689 816 ntBASIC11.99□□□□□ -0.49
HLA-DMBP28068 CBR1-202ENST00000399191 838 ntTSL 3 BASIC11.99□□□□□ -0.49
HLA-DMBP28068 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC11.99□□□□□ -0.49
HLA-DMBP28068 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC11.99□□□□□ -0.49
HLA-DMBP28068 AP000344.2-201ENST00000512987 629 ntBASIC11.99□□□□□ -0.49
HLA-DMBP28068 IGHV3-62-201ENST00000520057 340 ntBASIC11.99□□□□□ -0.49
HLA-DMBP28068 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DMBP28068 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms