Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.34■□□□□ 0.05
SIX3O95343 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
SIX3O95343 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SIX3O95343 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SIX3O95343 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
SIX3O95343 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
SIX3O95343 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
SIX3O95343 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SIX3O95343 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC15.33■□□□□ 0.05
SIX3O95343 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC15.33■□□□□ 0.05
SIX3O95343 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SIX3O95343 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.05
SIX3O95343 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.33■□□□□ 0.05
SIX3O95343 COCH-203ENST00000460581 2688 ntTSL 2 BASIC15.33■□□□□ 0.05
SIX3O95343 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC15.33■□□□□ 0.05
SIX3O95343 AC007686.3-201ENST00000619017 3487 ntBASIC15.33■□□□□ 0.05
SIX3O95343 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
SIX3O95343 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SIX3O95343 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
SIX3O95343 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SIX3O95343 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
SIX3O95343 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SIX3O95343 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC15.33■□□□□ 0.04
SIX3O95343 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC15.33■□□□□ 0.04
SIX3O95343 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.04
SIX3O95343 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SIX3O95343 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
SIX3O95343 BX842568.4-201ENST00000421222 227 ntBASIC15.33■□□□□ 0.04
SIX3O95343 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SIX3O95343 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC15.33■□□□□ 0.04
SIX3O95343 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC15.33■□□□□ 0.04
SIX3O95343 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.33■□□□□ 0.04
SIX3O95343 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC15.33■□□□□ 0.04
SIX3O95343 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
SIX3O95343 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.33■□□□□ 0.04
SIX3O95343 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC15.33■□□□□ 0.04
SIX3O95343 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
SIX3O95343 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SIX3O95343 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SIX3O95343 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
SIX3O95343 CICP23-201ENST00000605013 2741 ntBASIC15.33■□□□□ 0.04
SIX3O95343 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SIX3O95343 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SIX3O95343 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SIX3O95343 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SIX3O95343 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SIX3O95343 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SIX3O95343 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SIX3O95343 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SIX3O95343 CICP11-201ENST00000434745 2827 ntBASIC15.33■□□□□ 0.04
SIX3O95343 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SIX3O95343 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SIX3O95343 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SIX3O95343 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.33■□□□□ 0.04
SIX3O95343 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
SIX3O95343 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SIX3O95343 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SIX3O95343 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
SIX3O95343 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
SIX3O95343 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SIX3O95343 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SIX3O95343 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
SIX3O95343 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SIX3O95343 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.32■□□□□ 0.04
SIX3O95343 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SIX3O95343 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC15.32■□□□□ 0.04
SIX3O95343 RPS19-201ENST00000221975 500 ntTSL 3 BASIC15.32■□□□□ 0.04
SIX3O95343 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC15.32■□□□□ 0.04
SIX3O95343 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SIX3O95343 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SIX3O95343 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SIX3O95343 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
SIX3O95343 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SIX3O95343 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
SIX3O95343 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC15.32■□□□□ 0.04
SIX3O95343 FO393414.2-201ENST00000405153 598 ntBASIC15.32■□□□□ 0.04
SIX3O95343 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
SIX3O95343 UPF3AP3-201ENST00000420996 769 ntBASIC15.32■□□□□ 0.04
SIX3O95343 TARDBPP1-201ENST00000442013 1203 ntBASIC15.32■□□□□ 0.04
SIX3O95343 AC023141.5-201ENST00000458585 616 ntBASIC15.32■□□□□ 0.04
SIX3O95343 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC15.32■□□□□ 0.04
SIX3O95343 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.32■□□□□ 0.04
SIX3O95343 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC15.32■□□□□ 0.04
SIX3O95343 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC15.32■□□□□ 0.04
SIX3O95343 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC15.32■□□□□ 0.04
SIX3O95343 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
SIX3O95343 MIR6080-201ENST00000617359 66 ntBASIC15.32■□□□□ 0.04
SIX3O95343 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
SIX3O95343 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
SIX3O95343 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
SIX3O95343 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
SIX3O95343 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
SIX3O95343 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SIX3O95343 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SIX3O95343 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SIX3O95343 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
SIX3O95343 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
SIX3O95343 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
SIX3O95343 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
SIX3O95343 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms