Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SEMA3DO95025 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.06■□□□□ 0
SEMA3DO95025 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
SEMA3DO95025 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
SEMA3DO95025 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC15.06■□□□□ 0
SEMA3DO95025 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC15.06■□□□□ 0
SEMA3DO95025 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.06■□□□□ 0
SEMA3DO95025 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.06■□□□□ 0
SEMA3DO95025 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC15.06■□□□□ 0
SEMA3DO95025 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC15.06■□□□□ 0
SEMA3DO95025 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC15.06■□□□□ 0
SEMA3DO95025 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
SEMA3DO95025 LSM12-202ENST00000585388 942 ntTSL 3 BASIC15.06■□□□□ 0
SEMA3DO95025 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC15.06■□□□□ 0
SEMA3DO95025 AL033527.5-202ENST00000641632 1098 ntBASIC15.06■□□□□ 0
SEMA3DO95025 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SEMA3DO95025 TUBB3P1-201ENST00000405796 1332 ntBASIC15.06■□□□□ 0
SEMA3DO95025 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SEMA3DO95025 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
SEMA3DO95025 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC15.06■□□□□ 0
SEMA3DO95025 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
SEMA3DO95025 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC15.06■□□□□ 0
SEMA3DO95025 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SEMA3DO95025 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SEMA3DO95025 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.06■□□□□ 0
SEMA3DO95025 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
SEMA3DO95025 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.06■□□□□ 0
SEMA3DO95025 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SEMA3DO95025 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.06■□□□□ 0
SEMA3DO95025 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC15.06■□□□□ 0
SEMA3DO95025 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
SEMA3DO95025 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC15.06■□□□□ 0
SEMA3DO95025 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC15.06■□□□□ 0
SEMA3DO95025 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.06■□□□□ 0
SEMA3DO95025 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC15.06■□□□□ 0
SEMA3DO95025 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
SEMA3DO95025 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
SEMA3DO95025 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
SEMA3DO95025 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.05■□□□□ 0
SEMA3DO95025 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC15.05■□□□□ 0
SEMA3DO95025 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ 0
SEMA3DO95025 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC15.05■□□□□ 0
SEMA3DO95025 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.05■□□□□ 0
SEMA3DO95025 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
SEMA3DO95025 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
SEMA3DO95025 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
SEMA3DO95025 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.05■□□□□ 0
SEMA3DO95025 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
SEMA3DO95025 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.05■□□□□ -0
SEMA3DO95025 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SEMA3DO95025 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
SEMA3DO95025 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC15.05■□□□□ -0
SEMA3DO95025 WRB-204ENST00000398753 699 ntTSL 3 BASIC15.05■□□□□ -0
SEMA3DO95025 RPL37AP1-201ENST00000412502 279 ntBASIC15.05■□□□□ -0
SEMA3DO95025 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC15.05■□□□□ -0
SEMA3DO95025 TARDBPP1-201ENST00000442013 1203 ntBASIC15.05■□□□□ -0
SEMA3DO95025 URGCP-206ENST00000446958 365 ntTSL 2 BASIC15.05■□□□□ -0
SEMA3DO95025 KLF2P3-201ENST00000451977 1087 ntBASIC15.05■□□□□ -0
SEMA3DO95025 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC15.05■□□□□ -0
SEMA3DO95025 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC15.05■□□□□ -0
SEMA3DO95025 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC15.05■□□□□ -0
SEMA3DO95025 AC125807.1-201ENST00000483097 614 ntBASIC15.05■□□□□ -0
SEMA3DO95025 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC15.05■□□□□ -0
SEMA3DO95025 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC15.05■□□□□ -0
SEMA3DO95025 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC15.05■□□□□ -0
SEMA3DO95025 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
SEMA3DO95025 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC15.05■□□□□ -0
SEMA3DO95025 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC15.05■□□□□ -0
SEMA3DO95025 AC004449.1-201ENST00000564240 433 ntBASIC15.05■□□□□ -0
SEMA3DO95025 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.05■□□□□ -0
SEMA3DO95025 AC051619.7-201ENST00000568314 623 ntBASIC15.05■□□□□ -0
SEMA3DO95025 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.05■□□□□ -0
SEMA3DO95025 SPDYE12P-201ENST00000618416 771 ntBASIC15.05■□□□□ -0
SEMA3DO95025 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC15.05■□□□□ -0
SEMA3DO95025 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
SEMA3DO95025 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
SEMA3DO95025 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
SEMA3DO95025 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC15.05■□□□□ -0
SEMA3DO95025 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SEMA3DO95025 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SEMA3DO95025 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SEMA3DO95025 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SEMA3DO95025 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC15.05■□□□□ -0
SEMA3DO95025 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.05■□□□□ -0
SEMA3DO95025 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC15.05■□□□□ -0
SEMA3DO95025 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SEMA3DO95025 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SEMA3DO95025 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
SEMA3DO95025 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
SEMA3DO95025 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.05■□□□□ -0
SEMA3DO95025 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC15.05■□□□□ -0
SEMA3DO95025 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SEMA3DO95025 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.05■□□□□ -0
SEMA3DO95025 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.05■□□□□ -0
SEMA3DO95025 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.05■□□□□ -0
SEMA3DO95025 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.05■□□□□ -0
SEMA3DO95025 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SEMA3DO95025 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC15.05■□□□□ -0
SEMA3DO95025 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
SEMA3DO95025 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms