Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC21.46■■□□□ 1.03
NPHP4O75161 AC008723.1-201ENST00000506922 207 ntBASIC21.46■■□□□ 1.03
NPHP4O75161 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC21.46■■□□□ 1.03
NPHP4O75161 CCNC-217ENST00000523985 958 ntTSL 2 BASIC21.46■■□□□ 1.03
NPHP4O75161 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP4O75161 NAT9-220ENST00000582870 896 ntTSL 5 BASIC21.46■■□□□ 1.03
NPHP4O75161 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
NPHP4O75161 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
NPHP4O75161 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP4O75161 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
NPHP4O75161 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC21.45■■□□□ 1.03
NPHP4O75161 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC21.45■■□□□ 1.02
NPHP4O75161 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC21.45■■□□□ 1.02
NPHP4O75161 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP4O75161 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.45■■□□□ 1.02
NPHP4O75161 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP4O75161 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP4O75161 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
NPHP4O75161 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC21.45■■□□□ 1.02
NPHP4O75161 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP4O75161 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP4O75161 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP4O75161 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP4O75161 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP4O75161 CHCHD2P9-201ENST00000461726 456 ntBASIC21.45■■□□□ 1.02
NPHP4O75161 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP4O75161 AC026434.2-201ENST00000506094 1078 ntBASIC21.45■■□□□ 1.02
NPHP4O75161 ALG1L6P-201ENST00000515248 758 ntBASIC21.45■■□□□ 1.02
NPHP4O75161 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC21.45■■□□□ 1.02
NPHP4O75161 AC005962.1-201ENST00000584100 773 ntBASIC21.45■■□□□ 1.02
NPHP4O75161 AC138696.2-201ENST00000607376 223 ntBASIC21.45■■□□□ 1.02
NPHP4O75161 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP4O75161 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
NPHP4O75161 AC005618.3-201ENST00000624928 458 ntBASIC21.45■■□□□ 1.02
NPHP4O75161 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
NPHP4O75161 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC21.44■■□□□ 1.02
NPHP4O75161 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC21.44■■□□□ 1.02
NPHP4O75161 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP4O75161 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP4O75161 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC21.44■■□□□ 1.02
NPHP4O75161 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP4O75161 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP4O75161 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
NPHP4O75161 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC21.44■■□□□ 1.02
NPHP4O75161 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP4O75161 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP4O75161 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
NPHP4O75161 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP4O75161 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP4O75161 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
NPHP4O75161 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP4O75161 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
NPHP4O75161 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC21.44■■□□□ 1.02
NPHP4O75161 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC21.44■■□□□ 1.02
NPHP4O75161 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP4O75161 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC21.44■■□□□ 1.02
NPHP4O75161 MIR4522-201ENST00000584932 87 ntBASIC21.44■■□□□ 1.02
NPHP4O75161 AC025262.2-201ENST00000623975 1056 ntBASIC21.44■■□□□ 1.02
NPHP4O75161 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC21.44■■□□□ 1.02
NPHP4O75161 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
NPHP4O75161 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP4O75161 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP4O75161 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP4O75161 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP4O75161 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP4O75161 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
NPHP4O75161 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
NPHP4O75161 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC21.43■■□□□ 1.02
NPHP4O75161 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP4O75161 FRMPD2B-201ENST00000431305 1347 ntBASIC21.43■■□□□ 1.02
NPHP4O75161 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP4O75161 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC21.43■■□□□ 1.02
NPHP4O75161 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC21.43■■□□□ 1.02
NPHP4O75161 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP4O75161 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP4O75161 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
NPHP4O75161 PHBP15-201ENST00000574228 665 ntBASIC21.43■■□□□ 1.02
NPHP4O75161 MIR5196-201ENST00000578146 115 ntBASIC21.43■■□□□ 1.02
NPHP4O75161 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC21.43■■□□□ 1.02
NPHP4O75161 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP4O75161 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP4O75161 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP4O75161 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP4O75161 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP4O75161 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
NPHP4O75161 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC21.42■■□□□ 1.02
NPHP4O75161 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
NPHP4O75161 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
NPHP4O75161 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC21.42■■□□□ 1.02
NPHP4O75161 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
NPHP4O75161 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
NPHP4O75161 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
NPHP4O75161 AL592076.1-201ENST00000424448 303 ntBASIC21.42■■□□□ 1.02
NPHP4O75161 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
NPHP4O75161 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC21.42■■□□□ 1.02
NPHP4O75161 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
NPHP4O75161 AP000358.1-201ENST00000456260 156 ntBASIC21.42■■□□□ 1.02
NPHP4O75161 AL118516.1-201ENST00000564152 670 ntBASIC21.42■■□□□ 1.02
NPHP4O75161 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC21.42■■□□□ 1.02
NPHP4O75161 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC21.42■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms