Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA3O43365 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
HOXA3O43365 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
HOXA3O43365 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
HOXA3O43365 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA3O43365 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
HOXA3O43365 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA3O43365 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXA3O43365 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC12.62□□□□□ -0.39
HOXA3O43365 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC12.62□□□□□ -0.39
HOXA3O43365 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
HOXA3O43365 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
HOXA3O43365 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC12.62□□□□□ -0.39
HOXA3O43365 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC12.62□□□□□ -0.39
HOXA3O43365 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC12.62□□□□□ -0.39
HOXA3O43365 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC12.62□□□□□ -0.39
HOXA3O43365 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC12.62□□□□□ -0.39
HOXA3O43365 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC12.62□□□□□ -0.39
HOXA3O43365 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC12.62□□□□□ -0.39
HOXA3O43365 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC12.62□□□□□ -0.39
HOXA3O43365 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC12.62□□□□□ -0.39
HOXA3O43365 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC12.62□□□□□ -0.39
HOXA3O43365 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC12.62□□□□□ -0.39
HOXA3O43365 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
HOXA3O43365 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
HOXA3O43365 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC12.62□□□□□ -0.39
HOXA3O43365 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC12.62□□□□□ -0.39
HOXA3O43365 C1QBPP1-201ENST00000400117 770 ntBASIC12.62□□□□□ -0.39
HOXA3O43365 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC12.62□□□□□ -0.39
HOXA3O43365 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC12.62□□□□□ -0.39
HOXA3O43365 CTBP2P5-201ENST00000454986 1264 ntBASIC12.62□□□□□ -0.39
HOXA3O43365 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC12.62□□□□□ -0.39
HOXA3O43365 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC12.62□□□□□ -0.39
HOXA3O43365 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC12.62□□□□□ -0.39
HOXA3O43365 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
HOXA3O43365 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC12.62□□□□□ -0.39
HOXA3O43365 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC12.62□□□□□ -0.39
HOXA3O43365 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXA3O43365 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC12.61□□□□□ -0.39
HOXA3O43365 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
HOXA3O43365 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA3O43365 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
HOXA3O43365 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC12.61□□□□□ -0.39
HOXA3O43365 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC12.61□□□□□ -0.39
HOXA3O43365 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
HOXA3O43365 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA3O43365 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC12.61□□□□□ -0.39
HOXA3O43365 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA3O43365 AGK-211ENST00000629555 2765 ntTSL 5 BASIC12.61□□□□□ -0.39
HOXA3O43365 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC12.61□□□□□ -0.39
HOXA3O43365 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
HOXA3O43365 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA3O43365 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC12.61□□□□□ -0.39
HOXA3O43365 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA3O43365 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA3O43365 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC12.61□□□□□ -0.39
HOXA3O43365 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC12.61□□□□□ -0.39
HOXA3O43365 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC12.61□□□□□ -0.39
HOXA3O43365 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA3O43365 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA3O43365 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC12.61□□□□□ -0.39
HOXA3O43365 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA3O43365 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA3O43365 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA3O43365 ANKRD19P-201ENST00000338192 862 ntBASIC12.61□□□□□ -0.39
HOXA3O43365 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
HOXA3O43365 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC12.61□□□□□ -0.39
HOXA3O43365 AC136604.1-201ENST00000418535 575 ntBASIC12.61□□□□□ -0.39
HOXA3O43365 RPL28-203ENST00000428193 573 ntTSL 2 BASIC12.61□□□□□ -0.39
HOXA3O43365 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA3O43365 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC12.61□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms