Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4AQ9BY43 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4AQ9BY43 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC19.91■□□□□ 0.78
CHMP4AQ9BY43 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4AQ9BY43 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC19.91■□□□□ 0.78
CHMP4AQ9BY43 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4AQ9BY43 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4AQ9BY43 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC19.91■□□□□ 0.78
CHMP4AQ9BY43 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 ANKRD26P3-201ENST00000454044 2748 ntBASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 APOC4-201ENST00000591600 348 ntTSL 3 BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 AC010319.3-201ENST00000597028 470 ntBASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 AC107373.2-201ENST00000607735 490 ntBASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 IGHV3-72-202ENST00000621503 303 ntBASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 AL138799.1-201ENST00000448213 1675 ntBASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP4AQ9BY43 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.78
CHMP4AQ9BY43 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CHMP4AQ9BY43 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
CHMP4AQ9BY43 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 PFN2-205ENST00000461868 613 ntTSL 2 BASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 AC004066.1-201ENST00000502488 802 ntBASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 AC132938.2-201ENST00000579188 680 ntBASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 METTL26-214ENST00000614890 801 ntTSL 3 BASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 AL591163.1-201ENST00000641757 987 ntBASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CHMP4AQ9BY43 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC19.88■□□□□ 0.77
CHMP4AQ9BY43 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms