Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC13.77□□□□□ -0.21
NKX3-1Q99801 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC13.77□□□□□ -0.21
NKX3-1Q99801 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC13.77□□□□□ -0.21
NKX3-1Q99801 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC13.77□□□□□ -0.21
NKX3-1Q99801 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC13.77□□□□□ -0.21
NKX3-1Q99801 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC13.77□□□□□ -0.21
NKX3-1Q99801 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC13.77□□□□□ -0.21
NKX3-1Q99801 MIR4313-201ENST00000580760 101 ntBASIC13.77□□□□□ -0.21
NKX3-1Q99801 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX3-1Q99801 AGAP7P-201ENST00000582299 2062 ntBASIC13.77□□□□□ -0.21
NKX3-1Q99801 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.21
NKX3-1Q99801 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC13.77□□□□□ -0.21
NKX3-1Q99801 AGAP14-201ENST00000624701 2060 ntBASIC13.77□□□□□ -0.21
NKX3-1Q99801 LINC00552-201ENST00000625151 2579 ntBASIC13.77□□□□□ -0.21
NKX3-1Q99801 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC13.77□□□□□ -0.21
NKX3-1Q99801 AC007064.4-201ENST00000637740 555 ntBASIC13.77□□□□□ -0.21
NKX3-1Q99801 AC099063.4-201ENST00000641099 1602 ntBASIC13.77□□□□□ -0.21
NKX3-1Q99801 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX3-1Q99801 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
NKX3-1Q99801 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX3-1Q99801 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC13.77□□□□□ -0.21
NKX3-1Q99801 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX3-1Q99801 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX3-1Q99801 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX3-1Q99801 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX3-1Q99801 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC13.77□□□□□ -0.21
NKX3-1Q99801 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
NKX3-1Q99801 AC127383.1-201ENST00000444697 1800 ntBASIC13.76□□□□□ -0.21
NKX3-1Q99801 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
NKX3-1Q99801 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX3-1Q99801 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX3-1Q99801 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX3-1Q99801 WASH6P-202ENST00000359512 1437 ntBASIC13.76□□□□□ -0.21
NKX3-1Q99801 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX3-1Q99801 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX3-1Q99801 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX3-1Q99801 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
NKX3-1Q99801 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX3-1Q99801 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
NKX3-1Q99801 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX3-1Q99801 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
NKX3-1Q99801 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC13.76□□□□□ -0.21
NKX3-1Q99801 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC13.76□□□□□ -0.21
NKX3-1Q99801 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX3-1Q99801 AC023274.1-201ENST00000418278 595 ntBASIC13.76□□□□□ -0.21
NKX3-1Q99801 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
NKX3-1Q99801 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC13.76□□□□□ -0.21
NKX3-1Q99801 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC13.76□□□□□ -0.21
NKX3-1Q99801 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC13.76□□□□□ -0.21
NKX3-1Q99801 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC13.76□□□□□ -0.21
NKX3-1Q99801 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC13.76□□□□□ -0.21
NKX3-1Q99801 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC13.76□□□□□ -0.21
NKX3-1Q99801 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX3-1Q99801 PCDHA3-202ENST00000532566 4594 ntBASIC13.76□□□□□ -0.21
NKX3-1Q99801 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC13.76□□□□□ -0.21
NKX3-1Q99801 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
NKX3-1Q99801 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX3-1Q99801 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX3-1Q99801 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC13.76□□□□□ -0.21
NKX3-1Q99801 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX3-1Q99801 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC13.76□□□□□ -0.21
NKX3-1Q99801 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC13.76□□□□□ -0.21
NKX3-1Q99801 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
NKX3-1Q99801 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
NKX3-1Q99801 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX3-1Q99801 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
NKX3-1Q99801 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
NKX3-1Q99801 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
NKX3-1Q99801 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX3-1Q99801 FLII-221ENST00000578558 2377 ntTSL 5 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
NKX3-1Q99801 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX3-1Q99801 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
NKX3-1Q99801 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX3-1Q99801 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX3-1Q99801 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
NKX3-1Q99801 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX3-1Q99801 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX3-1Q99801 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
NKX3-1Q99801 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
NKX3-1Q99801 AC097376.2-205ENST00000610159 5334 ntBASIC13.75□□□□□ -0.21
NKX3-1Q99801 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX3-1Q99801 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX3-1Q99801 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
NKX3-1Q99801 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX3-1Q99801 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX3-1Q99801 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC13.75□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 128.6 ms