Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC18.34■□□□□ 0.53
NUP88Q99567 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC18.34■□□□□ 0.53
NUP88Q99567 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
NUP88Q99567 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NUP88Q99567 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC18.34■□□□□ 0.53
NUP88Q99567 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
NUP88Q99567 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
NUP88Q99567 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
NUP88Q99567 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC18.34■□□□□ 0.53
NUP88Q99567 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
NUP88Q99567 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC18.34■□□□□ 0.53
NUP88Q99567 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC18.34■□□□□ 0.53
NUP88Q99567 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC18.34■□□□□ 0.53
NUP88Q99567 RAB43P1-201ENST00000561790 589 ntBASIC18.34■□□□□ 0.53
NUP88Q99567 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NUP88Q99567 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
NUP88Q99567 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
NUP88Q99567 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC18.34■□□□□ 0.53
NUP88Q99567 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC18.34■□□□□ 0.53
NUP88Q99567 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC18.34■□□□□ 0.53
NUP88Q99567 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC18.34■□□□□ 0.53
NUP88Q99567 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC18.34■□□□□ 0.53
NUP88Q99567 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NUP88Q99567 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NUP88Q99567 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
NUP88Q99567 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC18.33■□□□□ 0.53
NUP88Q99567 AMT-232ENST00000636199 1546 ntTSL 5 BASIC18.33■□□□□ 0.53
NUP88Q99567 BLK-205ENST00000529894 2017 ntTSL 5 BASIC18.33■□□□□ 0.53
NUP88Q99567 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
NUP88Q99567 AC105917.1-201ENST00000506637 2539 ntBASIC18.33■□□□□ 0.53
NUP88Q99567 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC18.33■□□□□ 0.53
NUP88Q99567 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC18.33■□□□□ 0.53
NUP88Q99567 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
NUP88Q99567 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC18.33■□□□□ 0.53
NUP88Q99567 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC18.33■□□□□ 0.53
NUP88Q99567 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC18.33■□□□□ 0.52
NUP88Q99567 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC18.33■□□□□ 0.52
NUP88Q99567 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.33■□□□□ 0.52
NUP88Q99567 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC18.33■□□□□ 0.52
NUP88Q99567 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NUP88Q99567 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
NUP88Q99567 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC18.33■□□□□ 0.52
NUP88Q99567 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
NUP88Q99567 AC007389.4-201ENST00000454674 793 ntBASIC18.33■□□□□ 0.52
NUP88Q99567 CROCCP4-201ENST00000457096 498 ntBASIC18.33■□□□□ 0.52
NUP88Q99567 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NUP88Q99567 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC18.33■□□□□ 0.52
NUP88Q99567 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
NUP88Q99567 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC18.33■□□□□ 0.52
NUP88Q99567 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
NUP88Q99567 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
NUP88Q99567 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC18.33■□□□□ 0.52
NUP88Q99567 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NUP88Q99567 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NUP88Q99567 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC18.33■□□□□ 0.52
NUP88Q99567 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
NUP88Q99567 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NUP88Q99567 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
NUP88Q99567 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
NUP88Q99567 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
NUP88Q99567 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
NUP88Q99567 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
NUP88Q99567 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NUP88Q99567 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
NUP88Q99567 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NUP88Q99567 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NUP88Q99567 NSL1-201ENST00000366976 722 ntTSL 2 BASIC18.32■□□□□ 0.52
NUP88Q99567 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NUP88Q99567 MIR1909-201ENST00000411312 80 ntBASIC18.32■□□□□ 0.52
NUP88Q99567 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC18.32■□□□□ 0.52
NUP88Q99567 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NUP88Q99567 APOC4-201ENST00000591600 348 ntTSL 3 BASIC18.32■□□□□ 0.52
NUP88Q99567 BRI3BPP1-201ENST00000594224 787 ntBASIC18.32■□□□□ 0.52
NUP88Q99567 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC18.32■□□□□ 0.52
NUP88Q99567 AL512343.1-201ENST00000605837 169 ntBASIC18.32■□□□□ 0.52
NUP88Q99567 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC18.32■□□□□ 0.52
NUP88Q99567 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC18.32■□□□□ 0.52
NUP88Q99567 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC18.32■□□□□ 0.52
NUP88Q99567 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
NUP88Q99567 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
NUP88Q99567 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NUP88Q99567 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
NUP88Q99567 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC18.32■□□□□ 0.52
NUP88Q99567 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC18.32■□□□□ 0.52
NUP88Q99567 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NUP88Q99567 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NUP88Q99567 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NUP88Q99567 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC18.31■□□□□ 0.52
NUP88Q99567 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NUP88Q99567 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NUP88Q99567 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC18.31■□□□□ 0.52
NUP88Q99567 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC18.31■□□□□ 0.52
NUP88Q99567 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NUP88Q99567 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NUP88Q99567 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
NUP88Q99567 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NUP88Q99567 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NUP88Q99567 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
NUP88Q99567 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC18.31■□□□□ 0.52
NUP88Q99567 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms