Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
KRT39Q6A163 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
KRT39Q6A163 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC16.92■□□□□ 0.3
KRT39Q6A163 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.92■□□□□ 0.3
KRT39Q6A163 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
KRT39Q6A163 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
KRT39Q6A163 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.92■□□□□ 0.3
KRT39Q6A163 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
KRT39Q6A163 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC16.92■□□□□ 0.3
KRT39Q6A163 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
KRT39Q6A163 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
KRT39Q6A163 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC16.92■□□□□ 0.3
KRT39Q6A163 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
KRT39Q6A163 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC16.92■□□□□ 0.3
KRT39Q6A163 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
KRT39Q6A163 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
KRT39Q6A163 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
KRT39Q6A163 RPL5P21-201ENST00000404620 815 ntBASIC16.92■□□□□ 0.3
KRT39Q6A163 FAM8A3P-201ENST00000427218 844 ntBASIC16.92■□□□□ 0.3
KRT39Q6A163 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16.92■□□□□ 0.3
KRT39Q6A163 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
KRT39Q6A163 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC16.92■□□□□ 0.3
KRT39Q6A163 AC004840.1-201ENST00000636359 365 ntBASIC16.92■□□□□ 0.3
KRT39Q6A163 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.92■□□□□ 0.3
KRT39Q6A163 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
KRT39Q6A163 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
KRT39Q6A163 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC16.92■□□□□ 0.3
KRT39Q6A163 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
KRT39Q6A163 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
KRT39Q6A163 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC16.92■□□□□ 0.3
KRT39Q6A163 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC16.92■□□□□ 0.3
KRT39Q6A163 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
KRT39Q6A163 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.92■□□□□ 0.3
KRT39Q6A163 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
KRT39Q6A163 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
KRT39Q6A163 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
KRT39Q6A163 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
KRT39Q6A163 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
KRT39Q6A163 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
KRT39Q6A163 AC138035.3-201ENST00000622706 2791 ntBASIC16.91■□□□□ 0.3
KRT39Q6A163 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.91■□□□□ 0.3
KRT39Q6A163 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC16.91■□□□□ 0.3
KRT39Q6A163 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
KRT39Q6A163 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC16.91■□□□□ 0.3
KRT39Q6A163 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
KRT39Q6A163 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
KRT39Q6A163 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
KRT39Q6A163 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC16.91■□□□□ 0.3
KRT39Q6A163 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
KRT39Q6A163 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
KRT39Q6A163 MRPS18AP1-201ENST00000414458 589 ntBASIC16.91■□□□□ 0.3
KRT39Q6A163 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
KRT39Q6A163 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC16.91■□□□□ 0.3
KRT39Q6A163 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.91■□□□□ 0.3
KRT39Q6A163 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
KRT39Q6A163 RNA5SP421-201ENST00000516864 134 ntBASIC16.91■□□□□ 0.3
KRT39Q6A163 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC16.91■□□□□ 0.3
KRT39Q6A163 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.91■□□□□ 0.3
KRT39Q6A163 STOM-203ENST00000538954 1257 ntTSL 5 BASIC16.91■□□□□ 0.3
KRT39Q6A163 AC135586.1-201ENST00000539323 574 ntBASIC16.91■□□□□ 0.3
KRT39Q6A163 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
KRT39Q6A163 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
KRT39Q6A163 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
KRT39Q6A163 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
KRT39Q6A163 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.91■□□□□ 0.3
KRT39Q6A163 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
KRT39Q6A163 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.91■□□□□ 0.3
KRT39Q6A163 AMT-224ENST00000635808 1610 ntTSL 5 BASIC16.91■□□□□ 0.3
KRT39Q6A163 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
KRT39Q6A163 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
KRT39Q6A163 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
KRT39Q6A163 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
KRT39Q6A163 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC16.91■□□□□ 0.3
KRT39Q6A163 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
KRT39Q6A163 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
KRT39Q6A163 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.91■□□□□ 0.3
KRT39Q6A163 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
KRT39Q6A163 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
KRT39Q6A163 AL121723.1-201ENST00000445194 1519 ntBASIC16.91■□□□□ 0.3
KRT39Q6A163 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
KRT39Q6A163 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
KRT39Q6A163 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
KRT39Q6A163 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC16.9■□□□□ 0.3
KRT39Q6A163 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
KRT39Q6A163 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
KRT39Q6A163 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
KRT39Q6A163 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
KRT39Q6A163 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
KRT39Q6A163 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC16.9■□□□□ 0.3
KRT39Q6A163 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC16.9■□□□□ 0.3
KRT39Q6A163 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
KRT39Q6A163 KRT18P43-201ENST00000469825 1281 ntBASIC16.9■□□□□ 0.3
KRT39Q6A163 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC16.9■□□□□ 0.3
KRT39Q6A163 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
KRT39Q6A163 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC16.9■□□□□ 0.3
KRT39Q6A163 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC16.9■□□□□ 0.3
KRT39Q6A163 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC16.9■□□□□ 0.3
KRT39Q6A163 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
KRT39Q6A163 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
KRT39Q6A163 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms