Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
HSPG2P98160 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
HSPG2P98160 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC9.39□□□□□ -0.91
HSPG2P98160 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.91
HSPG2P98160 HLA-DPA2-205ENST00000433582 733 ntBASIC9.39□□□□□ -0.91
HSPG2P98160 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC9.39□□□□□ -0.91
HSPG2P98160 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC9.39□□□□□ -0.91
HSPG2P98160 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC9.39□□□□□ -0.91
HSPG2P98160 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
HSPG2P98160 AC084752.1-201ENST00000509766 622 ntBASIC9.39□□□□□ -0.91
HSPG2P98160 AC022616.1-201ENST00000518688 554 ntBASIC9.39□□□□□ -0.91
HSPG2P98160 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC9.39□□□□□ -0.91
HSPG2P98160 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC9.39□□□□□ -0.91
HSPG2P98160 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
HSPG2P98160 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
HSPG2P98160 AL157414.3-201ENST00000624276 1954 ntBASIC9.39□□□□□ -0.91
HSPG2P98160 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
HSPG2P98160 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
HSPG2P98160 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
HSPG2P98160 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
HSPG2P98160 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC9.39□□□□□ -0.91
HSPG2P98160 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
HSPG2P98160 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
HSPG2P98160 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
HSPG2P98160 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
HSPG2P98160 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC9.39□□□□□ -0.91
HSPG2P98160 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
HSPG2P98160 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC9.39□□□□□ -0.91
HSPG2P98160 AC026470.1-201ENST00000478038 846 ntBASIC9.39□□□□□ -0.91
HSPG2P98160 SIGLEC18P-201ENST00000602271 909 ntBASIC9.39□□□□□ -0.91
HSPG2P98160 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC9.39□□□□□ -0.91
HSPG2P98160 AP000593.2-201ENST00000542775 1433 ntBASIC9.39□□□□□ -0.91
HSPG2P98160 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC9.39□□□□□ -0.91
HSPG2P98160 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
HSPG2P98160 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC9.39□□□□□ -0.91
HSPG2P98160 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC9.39□□□□□ -0.91
HSPG2P98160 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC9.39□□□□□ -0.91
HSPG2P98160 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
HSPG2P98160 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
HSPG2P98160 AC005915.1-201ENST00000624912 2018 ntBASIC9.39□□□□□ -0.91
HSPG2P98160 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
HSPG2P98160 AC106827.1-201ENST00000366454 431 ntBASIC9.39□□□□□ -0.91
HSPG2P98160 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
HSPG2P98160 AC026434.2-201ENST00000506094 1078 ntBASIC9.39□□□□□ -0.91
HSPG2P98160 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC9.39□□□□□ -0.91
HSPG2P98160 MT3-203ENST00000565838 421 ntTSL 3 BASIC9.39□□□□□ -0.91
HSPG2P98160 AC093752.3-201ENST00000567343 901 ntBASIC9.39□□□□□ -0.91
HSPG2P98160 AC007952.4-201ENST00000573866 637 ntBASIC9.39□□□□□ -0.91
HSPG2P98160 AC138696.2-201ENST00000607376 223 ntBASIC9.39□□□□□ -0.91
HSPG2P98160 DNAJC10-211ENST00000640034 888 ntTSL 5 BASIC9.39□□□□□ -0.91
HSPG2P98160 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
HSPG2P98160 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC9.39□□□□□ -0.91
HSPG2P98160 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.91
HSPG2P98160 AL008718.2-201ENST00000609206 1313 ntBASIC9.39□□□□□ -0.91
HSPG2P98160 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
HSPG2P98160 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC9.39□□□□□ -0.91
HSPG2P98160 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.91
HSPG2P98160 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC9.39□□□□□ -0.91
HSPG2P98160 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC9.39□□□□□ -0.91
HSPG2P98160 FZD10-202ENST00000539839 3282 ntBASIC9.39□□□□□ -0.91
HSPG2P98160 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC9.38□□□□□ -0.91
HSPG2P98160 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC9.38□□□□□ -0.91
HSPG2P98160 KRT17P5-201ENST00000332088 839 ntBASIC9.38□□□□□ -0.91
HSPG2P98160 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC9.38□□□□□ -0.91
HSPG2P98160 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
HSPG2P98160 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC9.38□□□□□ -0.91
HSPG2P98160 MIR4313-201ENST00000580760 101 ntBASIC9.38□□□□□ -0.91
HSPG2P98160 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC9.38□□□□□ -0.91
HSPG2P98160 AP001184.1-201ENST00000637936 376 ntBASIC9.38□□□□□ -0.91
HSPG2P98160 AC004554.1-201ENST00000422830 1468 ntBASIC9.38□□□□□ -0.91
HSPG2P98160 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
HSPG2P98160 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
HSPG2P98160 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
HSPG2P98160 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC9.38□□□□□ -0.91
HSPG2P98160 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
HSPG2P98160 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
HSPG2P98160 AC105020.1-201ENST00000435356 2205 ntBASIC9.38□□□□□ -0.91
HSPG2P98160 AC141586.5-201ENST00000624546 2050 ntBASIC9.38□□□□□ -0.91
HSPG2P98160 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC9.38□□□□□ -0.91
HSPG2P98160 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
HSPG2P98160 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC9.38□□□□□ -0.91
HSPG2P98160 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
HSPG2P98160 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
HSPG2P98160 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
HSPG2P98160 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
HSPG2P98160 GDNF-207ENST00000515058 764 ntTSL 5 BASIC9.38□□□□□ -0.91
HSPG2P98160 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC9.38□□□□□ -0.91
HSPG2P98160 NAT9-220ENST00000582870 896 ntTSL 5 BASIC9.38□□□□□ -0.91
HSPG2P98160 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC9.38□□□□□ -0.91
HSPG2P98160 AC090510.3-201ENST00000615831 821 ntBASIC9.38□□□□□ -0.91
HSPG2P98160 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC9.38□□□□□ -0.91
HSPG2P98160 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
HSPG2P98160 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
HSPG2P98160 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC9.38□□□□□ -0.91
HSPG2P98160 AL672207.1-201ENST00000328462 1570 ntBASIC9.38□□□□□ -0.91
HSPG2P98160 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
HSPG2P98160 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC9.38□□□□□ -0.91
HSPG2P98160 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
HSPG2P98160 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
HSPG2P98160 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms