Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SUMO3P55854 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SUMO3P55854 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SUMO3P55854 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC14.15□□□□□ -0.14
SUMO3P55854 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC14.15□□□□□ -0.14
SUMO3P55854 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SUMO3P55854 AC112693.3-201ENST00000624819 1983 ntBASIC14.15□□□□□ -0.14
SUMO3P55854 POLL-217ENST00000628479 1953 ntTSL 5 BASIC14.15□□□□□ -0.14
SUMO3P55854 SLC7A15P-201ENST00000424028 1363 ntBASIC14.15□□□□□ -0.14
SUMO3P55854 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SUMO3P55854 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SUMO3P55854 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SUMO3P55854 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SUMO3P55854 SERBP1P5-201ENST00000510079 1181 ntBASIC14.15□□□□□ -0.14
SUMO3P55854 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC14.15□□□□□ -0.14
SUMO3P55854 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC14.15□□□□□ -0.14
SUMO3P55854 AC023310.3-201ENST00000557027 670 ntBASIC14.15□□□□□ -0.14
SUMO3P55854 AC100756.1-201ENST00000562736 682 ntBASIC14.15□□□□□ -0.14
SUMO3P55854 AC138749.3-201ENST00000567691 622 ntBASIC14.15□□□□□ -0.14
SUMO3P55854 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
SUMO3P55854 AC116165.1-201ENST00000611806 668 ntBASIC14.15□□□□□ -0.14
SUMO3P55854 AC004790.1-201ENST00000612686 536 ntBASIC14.15□□□□□ -0.14
SUMO3P55854 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SUMO3P55854 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
SUMO3P55854 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
SUMO3P55854 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SUMO3P55854 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SUMO3P55854 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SUMO3P55854 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SUMO3P55854 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SUMO3P55854 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC14.15□□□□□ -0.14
SUMO3P55854 AC067930.6-201ENST00000623257 4947 ntBASIC14.15□□□□□ -0.14
SUMO3P55854 API5-202ENST00000420461 2009 ntTSL 2 BASIC14.15□□□□□ -0.14
SUMO3P55854 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC14.15□□□□□ -0.14
SUMO3P55854 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC14.15□□□□□ -0.14
SUMO3P55854 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SUMO3P55854 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SUMO3P55854 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SUMO3P55854 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
SUMO3P55854 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SUMO3P55854 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
SUMO3P55854 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
SUMO3P55854 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
SUMO3P55854 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.14□□□□□ -0.15
SUMO3P55854 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.14□□□□□ -0.15
SUMO3P55854 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.14□□□□□ -0.15
SUMO3P55854 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SUMO3P55854 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SUMO3P55854 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SUMO3P55854 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
SUMO3P55854 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SUMO3P55854 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SUMO3P55854 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SUMO3P55854 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC14.14□□□□□ -0.15
SUMO3P55854 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SUMO3P55854 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
SUMO3P55854 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SUMO3P55854 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SUMO3P55854 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SUMO3P55854 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SUMO3P55854 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SUMO3P55854 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC14.14□□□□□ -0.15
SUMO3P55854 TDG-209ENST00000544861 1387 ntTSL 2 BASIC14.14□□□□□ -0.15
SUMO3P55854 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SUMO3P55854 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SUMO3P55854 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SUMO3P55854 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SUMO3P55854 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SUMO3P55854 CALY-202ENST00000368555 783 ntTSL 2 BASIC14.14□□□□□ -0.15
SUMO3P55854 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SUMO3P55854 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SUMO3P55854 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.14□□□□□ -0.15
SUMO3P55854 AC087499.6-201ENST00000411576 835 ntBASIC14.14□□□□□ -0.15
SUMO3P55854 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC14.14□□□□□ -0.15
SUMO3P55854 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC14.14□□□□□ -0.15
SUMO3P55854 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.14□□□□□ -0.15
SUMO3P55854 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.14□□□□□ -0.15
SUMO3P55854 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
SUMO3P55854 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
SUMO3P55854 RN7SL399P-201ENST00000471648 279 ntBASIC14.14□□□□□ -0.15
SUMO3P55854 FAM86LP-201ENST00000478302 853 ntBASIC14.14□□□□□ -0.15
SUMO3P55854 CD81-207ENST00000481687 890 ntTSL 2 BASIC14.14□□□□□ -0.15
SUMO3P55854 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.14□□□□□ -0.15
SUMO3P55854 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.14□□□□□ -0.15
SUMO3P55854 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC14.14□□□□□ -0.15
SUMO3P55854 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC14.14□□□□□ -0.15
SUMO3P55854 AC004233.3-201ENST00000607794 1269 ntBASIC14.14□□□□□ -0.15
SUMO3P55854 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SUMO3P55854 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SUMO3P55854 AC008761.3-201ENST00000624803 892 ntBASIC14.14□□□□□ -0.15
SUMO3P55854 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC14.14□□□□□ -0.15
SUMO3P55854 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SUMO3P55854 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC14.14□□□□□ -0.15
SUMO3P55854 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SUMO3P55854 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.14□□□□□ -0.15
SUMO3P55854 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SUMO3P55854 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC14.14□□□□□ -0.15
SUMO3P55854 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SUMO3P55854 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SUMO3P55854 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms