Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC16.4■□□□□ 0.22
COL4A4P53420 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC16.4■□□□□ 0.22
COL4A4P53420 RN7SL48P-201ENST00000579283 293 ntBASIC16.4■□□□□ 0.22
COL4A4P53420 ZACNP1-201ENST00000612259 710 ntBASIC16.4■□□□□ 0.22
COL4A4P53420 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
COL4A4P53420 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A4P53420 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A4P53420 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A4P53420 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A4P53420 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
COL4A4P53420 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC16.4■□□□□ 0.22
COL4A4P53420 AC006480.2-201ENST00000609770 1337 ntBASIC16.4■□□□□ 0.22
COL4A4P53420 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A4P53420 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A4P53420 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC16.4■□□□□ 0.22
COL4A4P53420 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
COL4A4P53420 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC16.4■□□□□ 0.22
COL4A4P53420 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A4P53420 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
COL4A4P53420 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A4P53420 B9D1-203ENST00000395615 805 ntTSL 3 BASIC16.4■□□□□ 0.22
COL4A4P53420 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A4P53420 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
COL4A4P53420 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
COL4A4P53420 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A4P53420 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A4P53420 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC16.39■□□□□ 0.22
COL4A4P53420 LRRC59-203ENST00000576448 1531 ntBASIC16.39■□□□□ 0.21
COL4A4P53420 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.39■□□□□ 0.21
COL4A4P53420 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A4P53420 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.39■□□□□ 0.21
COL4A4P53420 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
COL4A4P53420 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A4P53420 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.39■□□□□ 0.21
COL4A4P53420 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A4P53420 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A4P53420 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC16.39■□□□□ 0.21
COL4A4P53420 CD8B2-202ENST00000417670 633 ntBASIC16.39■□□□□ 0.21
COL4A4P53420 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC16.39■□□□□ 0.21
COL4A4P53420 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A4P53420 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC16.39■□□□□ 0.21
COL4A4P53420 AC104784.1-201ENST00000473096 294 ntBASIC16.39■□□□□ 0.21
COL4A4P53420 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC16.39■□□□□ 0.21
COL4A4P53420 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A4P53420 ENPP7P14-201ENST00000621765 1040 ntBASIC16.39■□□□□ 0.21
COL4A4P53420 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC16.39■□□□□ 0.21
COL4A4P53420 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.39■□□□□ 0.21
COL4A4P53420 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A4P53420 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A4P53420 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A4P53420 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
COL4A4P53420 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A4P53420 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.39■□□□□ 0.21
COL4A4P53420 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.39■□□□□ 0.21
COL4A4P53420 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A4P53420 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.39■□□□□ 0.21
COL4A4P53420 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.39■□□□□ 0.21
COL4A4P53420 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.39■□□□□ 0.21
COL4A4P53420 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL4A4P53420 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC16.38■□□□□ 0.21
COL4A4P53420 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL4A4P53420 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.38■□□□□ 0.21
COL4A4P53420 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL4A4P53420 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC16.38■□□□□ 0.21
COL4A4P53420 TNRC18P3-201ENST00000441896 2691 ntBASIC16.38■□□□□ 0.21
COL4A4P53420 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL4A4P53420 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL4A4P53420 OARD1-204ENST00000464633 717 ntTSL 2 BASIC16.38■□□□□ 0.21
COL4A4P53420 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC16.38■□□□□ 0.21
COL4A4P53420 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC16.38■□□□□ 0.21
COL4A4P53420 AC106794.1-201ENST00000506935 792 ntBASIC16.38■□□□□ 0.21
COL4A4P53420 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC16.38■□□□□ 0.21
COL4A4P53420 RN7SL774P-201ENST00000577467 290 ntBASIC16.38■□□□□ 0.21
COL4A4P53420 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL4A4P53420 RN7SL736P-201ENST00000613111 269 ntBASIC16.38■□□□□ 0.21
COL4A4P53420 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL4A4P53420 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.38■□□□□ 0.21
COL4A4P53420 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.38■□□□□ 0.21
COL4A4P53420 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL4A4P53420 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL4A4P53420 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.38■□□□□ 0.21
COL4A4P53420 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.38■□□□□ 0.21
COL4A4P53420 AC105250.1-201ENST00000509378 2057 ntBASIC16.37■□□□□ 0.21
COL4A4P53420 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL4A4P53420 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
COL4A4P53420 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL4A4P53420 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
COL4A4P53420 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC16.37■□□□□ 0.21
COL4A4P53420 POLL-217ENST00000628479 1953 ntTSL 5 BASIC16.37■□□□□ 0.21
COL4A4P53420 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL4A4P53420 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL4A4P53420 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL4A4P53420 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC16.37■□□□□ 0.21
COL4A4P53420 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC16.37■□□□□ 0.21
COL4A4P53420 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC16.37■□□□□ 0.21
COL4A4P53420 CEP164P1-201ENST00000455142 418 ntBASIC16.37■□□□□ 0.21
COL4A4P53420 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
COL4A4P53420 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC16.37■□□□□ 0.21
COL4A4P53420 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC16.37■□□□□ 0.21
COL4A4P53420 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms