Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC18.39■□□□□ 0.54
MRE11P49959 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
MRE11P49959 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.54
MRE11P49959 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC18.39■□□□□ 0.54
MRE11P49959 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
MRE11P49959 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
MRE11P49959 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.54
MRE11P49959 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.54
MRE11P49959 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
MRE11P49959 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
MRE11P49959 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MRE11P49959 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC18.39■□□□□ 0.53
MRE11P49959 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MRE11P49959 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MRE11P49959 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
MRE11P49959 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC18.39■□□□□ 0.53
MRE11P49959 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
MRE11P49959 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC18.39■□□□□ 0.53
MRE11P49959 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
MRE11P49959 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MRE11P49959 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MRE11P49959 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MRE11P49959 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
MRE11P49959 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
MRE11P49959 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MRE11P49959 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC18.39■□□□□ 0.53
MRE11P49959 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
MRE11P49959 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC18.39■□□□□ 0.53
MRE11P49959 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MRE11P49959 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MRE11P49959 ALG1L5P-201ENST00000482043 771 ntBASIC18.39■□□□□ 0.53
MRE11P49959 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MRE11P49959 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
MRE11P49959 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC18.39■□□□□ 0.53
MRE11P49959 AC069262.1-201ENST00000539058 672 ntBASIC18.39■□□□□ 0.53
MRE11P49959 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC18.39■□□□□ 0.53
MRE11P49959 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC18.39■□□□□ 0.53
MRE11P49959 AC084346.2-201ENST00000607097 949 ntBASIC18.39■□□□□ 0.53
MRE11P49959 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MRE11P49959 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
MRE11P49959 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MRE11P49959 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC18.39■□□□□ 0.53
MRE11P49959 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
MRE11P49959 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
MRE11P49959 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
MRE11P49959 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC18.39■□□□□ 0.53
MRE11P49959 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC18.39■□□□□ 0.53
MRE11P49959 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC18.39■□□□□ 0.53
MRE11P49959 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MRE11P49959 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MRE11P49959 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC18.38■□□□□ 0.53
MRE11P49959 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
MRE11P49959 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MRE11P49959 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MRE11P49959 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
MRE11P49959 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MRE11P49959 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
MRE11P49959 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MRE11P49959 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
MRE11P49959 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MRE11P49959 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MRE11P49959 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC18.38■□□□□ 0.53
MRE11P49959 METTL26-205ENST00000397666 726 ntTSL 2 BASIC18.38■□□□□ 0.53
MRE11P49959 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.38■□□□□ 0.53
MRE11P49959 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC18.38■□□□□ 0.53
MRE11P49959 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.38■□□□□ 0.53
MRE11P49959 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC18.38■□□□□ 0.53
MRE11P49959 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
MRE11P49959 OR7E14P-202ENST00000530490 1290 ntBASIC18.38■□□□□ 0.53
MRE11P49959 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18.38■□□□□ 0.53
MRE11P49959 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
MRE11P49959 PAM16-208ENST00000573553 722 ntTSL 2 BASIC18.38■□□□□ 0.53
MRE11P49959 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
MRE11P49959 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
MRE11P49959 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
MRE11P49959 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.38■□□□□ 0.53
MRE11P49959 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC18.38■□□□□ 0.53
MRE11P49959 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
MRE11P49959 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MRE11P49959 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
MRE11P49959 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC18.38■□□□□ 0.53
MRE11P49959 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC18.38■□□□□ 0.53
MRE11P49959 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
MRE11P49959 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MRE11P49959 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
MRE11P49959 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MRE11P49959 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC18.38■□□□□ 0.53
MRE11P49959 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MRE11P49959 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC18.38■□□□□ 0.53
MRE11P49959 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
MRE11P49959 AC027601.5-201ENST00000624065 2482 ntBASIC18.38■□□□□ 0.53
MRE11P49959 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
MRE11P49959 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
MRE11P49959 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC18.37■□□□□ 0.53
MRE11P49959 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC18.37■□□□□ 0.53
MRE11P49959 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
MRE11P49959 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
MRE11P49959 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC18.37■□□□□ 0.53
MRE11P49959 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC18.37■□□□□ 0.53
MRE11P49959 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms