Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.47■□□□□ 0.23
APOEP02649 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
APOEP02649 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.47■□□□□ 0.23
APOEP02649 HNRNPUP1-201ENST00000554987 333 ntBASIC16.47■□□□□ 0.23
APOEP02649 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC16.47■□□□□ 0.23
APOEP02649 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC16.47■□□□□ 0.23
APOEP02649 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
APOEP02649 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
APOEP02649 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
APOEP02649 Z97205.2-201ENST00000564697 1639 ntBASIC16.47■□□□□ 0.23
APOEP02649 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
APOEP02649 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
APOEP02649 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.47■□□□□ 0.23
APOEP02649 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
APOEP02649 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
APOEP02649 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.47■□□□□ 0.23
APOEP02649 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC16.47■□□□□ 0.23
APOEP02649 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC16.47■□□□□ 0.23
APOEP02649 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
APOEP02649 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
APOEP02649 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC16.46■□□□□ 0.23
APOEP02649 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
APOEP02649 AC018892.3-201ENST00000623986 2499 ntBASIC16.46■□□□□ 0.23
APOEP02649 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
APOEP02649 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
APOEP02649 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
APOEP02649 AC144831.1-201ENST00000573312 2656 ntBASIC16.46■□□□□ 0.23
APOEP02649 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.46■□□□□ 0.23
APOEP02649 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC16.46■□□□□ 0.23
APOEP02649 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.46■□□□□ 0.23
APOEP02649 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
APOEP02649 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
APOEP02649 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
APOEP02649 AC136604.1-201ENST00000418535 575 ntBASIC16.46■□□□□ 0.23
APOEP02649 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.46■□□□□ 0.23
APOEP02649 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
APOEP02649 AC002472.2-201ENST00000442739 958 ntBASIC16.46■□□□□ 0.23
APOEP02649 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.46■□□□□ 0.23
APOEP02649 TERF1P3-201ENST00000505638 1227 ntBASIC16.46■□□□□ 0.23
APOEP02649 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC16.46■□□□□ 0.23
APOEP02649 TIMM17BP1-201ENST00000545713 516 ntBASIC16.46■□□□□ 0.23
APOEP02649 AC104794.3-201ENST00000566840 1248 ntBASIC16.46■□□□□ 0.23
APOEP02649 RN7SL204P-201ENST00000582831 262 ntBASIC16.46■□□□□ 0.23
APOEP02649 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
APOEP02649 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
APOEP02649 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC16.46■□□□□ 0.23
APOEP02649 LINC02560-201ENST00000596379 459 ntBASIC16.46■□□□□ 0.23
APOEP02649 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
APOEP02649 AC008761.3-201ENST00000624803 892 ntBASIC16.46■□□□□ 0.23
APOEP02649 AC004461.2-201ENST00000629517 803 ntBASIC16.46■□□□□ 0.23
APOEP02649 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
APOEP02649 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
APOEP02649 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.46■□□□□ 0.23
APOEP02649 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
APOEP02649 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
APOEP02649 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
APOEP02649 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.46■□□□□ 0.22
APOEP02649 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC16.46■□□□□ 0.22
APOEP02649 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
APOEP02649 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
APOEP02649 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
APOEP02649 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
APOEP02649 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.22
APOEP02649 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
APOEP02649 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16.45■□□□□ 0.22
APOEP02649 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.45■□□□□ 0.22
APOEP02649 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
APOEP02649 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC16.45■□□□□ 0.22
APOEP02649 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
APOEP02649 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC16.45■□□□□ 0.22
APOEP02649 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.45■□□□□ 0.22
APOEP02649 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.45■□□□□ 0.22
APOEP02649 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.45■□□□□ 0.22
APOEP02649 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
APOEP02649 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
APOEP02649 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
APOEP02649 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
APOEP02649 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
APOEP02649 KLK8-202ENST00000320838 456 ntTSL 5 BASIC16.45■□□□□ 0.22
APOEP02649 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
APOEP02649 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.45■□□□□ 0.22
APOEP02649 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
APOEP02649 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
APOEP02649 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC16.45■□□□□ 0.22
APOEP02649 TARDBPP1-201ENST00000442013 1203 ntBASIC16.45■□□□□ 0.22
APOEP02649 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.45■□□□□ 0.22
APOEP02649 NME4-207ENST00000450036 985 ntTSL 3 BASIC16.45■□□□□ 0.22
APOEP02649 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.45■□□□□ 0.22
APOEP02649 OARD1-208ENST00000469104 704 ntTSL 2 BASIC16.45■□□□□ 0.22
APOEP02649 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC16.45■□□□□ 0.22
APOEP02649 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC16.45■□□□□ 0.22
APOEP02649 SERBP1P5-201ENST00000510079 1181 ntBASIC16.45■□□□□ 0.22
APOEP02649 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
APOEP02649 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
APOEP02649 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.45■□□□□ 0.22
APOEP02649 MIR3197-201ENST00000582241 73 ntBASIC16.45■□□□□ 0.22
APOEP02649 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
APOEP02649 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC16.45■□□□□ 0.22
APOEP02649 AC004233.3-201ENST00000607794 1269 ntBASIC16.45■□□□□ 0.22
APOEP02649 RNA5-8SN1-201ENST00000610460 153 ntBASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms