Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A1P02462 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A1P02462 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A1P02462 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
COL4A1P02462 HNRNPA1P63-201ENST00000427917 963 ntBASIC18.76■□□□□ 0.59
COL4A1P02462 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A1P02462 ARTN-209ENST00000479128 471 ntTSL 3 BASIC18.76■□□□□ 0.59
COL4A1P02462 AL645939.5-201ENST00000606834 243 ntBASIC18.76■□□□□ 0.59
COL4A1P02462 AL358472.3-201ENST00000608147 415 ntBASIC18.76■□□□□ 0.59
COL4A1P02462 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
COL4A1P02462 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
COL4A1P02462 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC18.76■□□□□ 0.59
COL4A1P02462 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC18.76■□□□□ 0.59
COL4A1P02462 AC090616.6-203ENST00000579186 1945 ntBASIC18.76■□□□□ 0.59
COL4A1P02462 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC18.75■□□□□ 0.59
COL4A1P02462 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A1P02462 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A1P02462 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.75■□□□□ 0.59
COL4A1P02462 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
COL4A1P02462 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
COL4A1P02462 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC18.75■□□□□ 0.59
COL4A1P02462 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A1P02462 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A1P02462 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A1P02462 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC18.75■□□□□ 0.59
COL4A1P02462 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC18.75■□□□□ 0.59
COL4A1P02462 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC18.75■□□□□ 0.59
COL4A1P02462 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC18.75■□□□□ 0.59
COL4A1P02462 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A1P02462 AC020914.3-201ENST00000594712 304 ntBASIC18.75■□□□□ 0.59
COL4A1P02462 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A1P02462 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A1P02462 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC18.75■□□□□ 0.59
COL4A1P02462 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
COL4A1P02462 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
COL4A1P02462 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC18.74■□□□□ 0.59
COL4A1P02462 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A1P02462 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC18.74■□□□□ 0.59
COL4A1P02462 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A1P02462 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A1P02462 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
COL4A1P02462 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A1P02462 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC18.74■□□□□ 0.59
COL4A1P02462 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A1P02462 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC18.74■□□□□ 0.59
COL4A1P02462 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC18.74■□□□□ 0.59
COL4A1P02462 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A1P02462 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A1P02462 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
COL4A1P02462 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC18.74■□□□□ 0.59
COL4A1P02462 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC18.74■□□□□ 0.59
COL4A1P02462 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC18.74■□□□□ 0.59
COL4A1P02462 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC18.74■□□□□ 0.59
COL4A1P02462 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
COL4A1P02462 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC18.74■□□□□ 0.59
COL4A1P02462 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC18.74■□□□□ 0.59
COL4A1P02462 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC18.74■□□□□ 0.59
COL4A1P02462 AC026691.1-201ENST00000602502 2017 ntBASIC18.74■□□□□ 0.59
COL4A1P02462 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC18.74■□□□□ 0.59
COL4A1P02462 BID-213ENST00000615414 2236 ntTSL 5 BASIC18.74■□□□□ 0.59
COL4A1P02462 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A1P02462 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC18.74■□□□□ 0.59
COL4A1P02462 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A1P02462 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A1P02462 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
COL4A1P02462 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A1P02462 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC18.74■□□□□ 0.59
COL4A1P02462 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A1P02462 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC18.73■□□□□ 0.59
COL4A1P02462 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A1P02462 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
COL4A1P02462 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A1P02462 CYP46A4P-201ENST00000414953 267 ntBASIC18.73■□□□□ 0.59
COL4A1P02462 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC18.73■□□□□ 0.59
COL4A1P02462 AC026434.2-201ENST00000506094 1078 ntBASIC18.73■□□□□ 0.59
COL4A1P02462 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC18.73■□□□□ 0.59
COL4A1P02462 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A1P02462 AC015967.2-201ENST00000624092 234 ntBASIC18.73■□□□□ 0.59
COL4A1P02462 AC006435.4-201ENST00000625037 234 ntBASIC18.73■□□□□ 0.59
COL4A1P02462 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC18.73■□□□□ 0.59
COL4A1P02462 CDK7-214ENST00000626796 358 ntTSL 5 BASIC18.73■□□□□ 0.59
COL4A1P02462 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC18.73■□□□□ 0.59
COL4A1P02462 AL356737.1-201ENST00000634391 234 ntBASIC18.73■□□□□ 0.59
COL4A1P02462 AC138627.1-207ENST00000641560 1006 ntBASIC18.73■□□□□ 0.59
COL4A1P02462 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A1P02462 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A1P02462 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A1P02462 AP005117.1-202ENST00000581724 1908 ntBASIC18.73■□□□□ 0.59
COL4A1P02462 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
COL4A1P02462 ANKRD30BP2-201ENST00000435744 1610 ntBASIC18.73■□□□□ 0.59
COL4A1P02462 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC18.73■□□□□ 0.59
COL4A1P02462 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A1P02462 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A1P02462 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A1P02462 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
COL4A1P02462 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A1P02462 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.73■□□□□ 0.59
COL4A1P02462 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
COL4A1P02462 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A1P02462 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms