Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL3A1P02461 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL3A1P02461 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL3A1P02461 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC20.33■□□□□ 0.85
COL3A1P02461 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
COL3A1P02461 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
COL3A1P02461 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL3A1P02461 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC20.33■□□□□ 0.85
COL3A1P02461 PFN2-215ENST00000497148 743 ntTSL 4 BASIC20.33■□□□□ 0.85
COL3A1P02461 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC20.33■□□□□ 0.85
COL3A1P02461 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC20.33■□□□□ 0.85
COL3A1P02461 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL3A1P02461 TECR-220ENST00000600083 1204 ntTSL 2 BASIC20.33■□□□□ 0.85
COL3A1P02461 AC009542.2-202ENST00000619004 1067 ntBASIC20.33■□□□□ 0.85
COL3A1P02461 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC20.33■□□□□ 0.85
COL3A1P02461 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL3A1P02461 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL3A1P02461 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL3A1P02461 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC20.33■□□□□ 0.84
COL3A1P02461 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC20.33■□□□□ 0.84
COL3A1P02461 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL3A1P02461 REXO1L2P-201ENST00000425429 2069 ntBASIC20.33■□□□□ 0.84
COL3A1P02461 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC20.33■□□□□ 0.84
COL3A1P02461 AL109954.1-202ENST00000564051 2148 ntBASIC20.33■□□□□ 0.84
COL3A1P02461 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL3A1P02461 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL3A1P02461 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC20.32■□□□□ 0.84
COL3A1P02461 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL3A1P02461 AC012508.2-201ENST00000567613 1472 ntBASIC20.32■□□□□ 0.84
COL3A1P02461 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
COL3A1P02461 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
COL3A1P02461 RPS15-201ENST00000233609 534 ntTSL 2 BASIC20.32■□□□□ 0.84
COL3A1P02461 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL3A1P02461 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL3A1P02461 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL3A1P02461 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL3A1P02461 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC20.32■□□□□ 0.84
COL3A1P02461 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
COL3A1P02461 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC20.32■□□□□ 0.84
COL3A1P02461 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC20.32■□□□□ 0.84
COL3A1P02461 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC20.32■□□□□ 0.84
COL3A1P02461 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC20.32■□□□□ 0.84
COL3A1P02461 DUX4L45-201ENST00000566406 1057 ntBASIC20.32■□□□□ 0.84
COL3A1P02461 RPS15-205ENST00000586686 562 ntTSL 5 BASIC20.32■□□□□ 0.84
COL3A1P02461 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC20.32■□□□□ 0.84
COL3A1P02461 RPS15-208ENST00000591804 711 ntTSL 5 BASIC20.32■□□□□ 0.84
COL3A1P02461 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL3A1P02461 ENPP7P14-201ENST00000621765 1040 ntBASIC20.32■□□□□ 0.84
COL3A1P02461 AL603764.1-201ENST00000636452 321 ntBASIC20.32■□□□□ 0.84
COL3A1P02461 AC008687.7-202ENST00000637404 953 ntBASIC20.32■□□□□ 0.84
COL3A1P02461 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL3A1P02461 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL3A1P02461 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC20.32■□□□□ 0.84
COL3A1P02461 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC20.32■□□□□ 0.84
COL3A1P02461 CELP-203ENST00000624767 2414 ntTSL 5 BASIC20.32■□□□□ 0.84
COL3A1P02461 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC20.32■□□□□ 0.84
COL3A1P02461 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
COL3A1P02461 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL3A1P02461 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC20.31■□□□□ 0.84
COL3A1P02461 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL3A1P02461 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL3A1P02461 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
COL3A1P02461 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
COL3A1P02461 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC20.31■□□□□ 0.84
COL3A1P02461 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
COL3A1P02461 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL3A1P02461 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL3A1P02461 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
COL3A1P02461 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC20.31■□□□□ 0.84
COL3A1P02461 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC20.31■□□□□ 0.84
COL3A1P02461 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC20.31■□□□□ 0.84
COL3A1P02461 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC20.31■□□□□ 0.84
COL3A1P02461 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC20.31■□□□□ 0.84
COL3A1P02461 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL3A1P02461 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL3A1P02461 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL3A1P02461 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC20.31■□□□□ 0.84
COL3A1P02461 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL3A1P02461 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
COL3A1P02461 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
COL3A1P02461 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC20.31■□□□□ 0.84
COL3A1P02461 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL3A1P02461 PGR-210ENST00000619228 3038 ntTSL 5 BASIC20.31■□□□□ 0.84
COL3A1P02461 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC20.31■□□□□ 0.84
COL3A1P02461 LRRC59-203ENST00000576448 1531 ntBASIC20.31■□□□□ 0.84
COL3A1P02461 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC20.31■□□□□ 0.84
COL3A1P02461 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL3A1P02461 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC20.31■□□□□ 0.84
COL3A1P02461 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL3A1P02461 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL3A1P02461 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
COL3A1P02461 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
COL3A1P02461 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL3A1P02461 C2orf27AP3-201ENST00000434123 579 ntBASIC20.3■□□□□ 0.84
COL3A1P02461 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC20.3■□□□□ 0.84
COL3A1P02461 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
COL3A1P02461 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC20.3■□□□□ 0.84
COL3A1P02461 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC20.3■□□□□ 0.84
COL3A1P02461 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC20.3■□□□□ 0.84
COL3A1P02461 AL354718.3-201ENST00000616414 581 ntBASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms