Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC3O15379 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
HDAC3O15379 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC3O15379 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC3O15379 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC3O15379 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC3O15379 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC15.3■□□□□ 0.04
HDAC3O15379 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
HDAC3O15379 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC3O15379 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC3O15379 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC3O15379 IPPK-202ENST00000375522 882 ntTSL 3 BASIC15.3■□□□□ 0.04
HDAC3O15379 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC15.3■□□□□ 0.04
HDAC3O15379 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC3O15379 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC15.3■□□□□ 0.04
HDAC3O15379 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC15.3■□□□□ 0.04
HDAC3O15379 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC15.3■□□□□ 0.04
HDAC3O15379 AKAP8P1-201ENST00000434743 1349 ntBASIC15.3■□□□□ 0.04
HDAC3O15379 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC3O15379 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC3O15379 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
HDAC3O15379 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
HDAC3O15379 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC15.3■□□□□ 0.04
HDAC3O15379 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15.3■□□□□ 0.04
HDAC3O15379 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
HDAC3O15379 RNA5SP419-201ENST00000515908 135 ntBASIC15.3■□□□□ 0.04
HDAC3O15379 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC15.3■□□□□ 0.04
HDAC3O15379 AC027307.2-201ENST00000591252 911 ntBASIC15.3■□□□□ 0.04
HDAC3O15379 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
HDAC3O15379 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.3■□□□□ 0.04
HDAC3O15379 AC064836.3-201ENST00000607928 673 ntBASIC15.3■□□□□ 0.04
HDAC3O15379 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.3■□□□□ 0.04
HDAC3O15379 AC008267.7-201ENST00000624570 1194 ntBASIC15.3■□□□□ 0.04
HDAC3O15379 CICP14-201ENST00000629111 2732 ntBASIC15.3■□□□□ 0.04
HDAC3O15379 AC140479.7-201ENST00000636301 2332 ntBASIC15.3■□□□□ 0.04
HDAC3O15379 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
HDAC3O15379 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC3O15379 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC15.3■□□□□ 0.04
HDAC3O15379 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDAC3O15379 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
HDAC3O15379 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC3O15379 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC15.29■□□□□ 0.04
HDAC3O15379 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC3O15379 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
HDAC3O15379 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC3O15379 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC3O15379 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
HDAC3O15379 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.29■□□□□ 0.04
HDAC3O15379 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC3O15379 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
HDAC3O15379 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC3O15379 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.29■□□□□ 0.04
HDAC3O15379 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
HDAC3O15379 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC3O15379 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
HDAC3O15379 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.29■□□□□ 0.04
HDAC3O15379 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC3O15379 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
HDAC3O15379 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
HDAC3O15379 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC15.29■□□□□ 0.04
HDAC3O15379 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC3O15379 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC15.29■□□□□ 0.04
HDAC3O15379 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC15.29■□□□□ 0.04
HDAC3O15379 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC15.29■□□□□ 0.04
HDAC3O15379 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC15.29■□□□□ 0.04
HDAC3O15379 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC3O15379 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC3O15379 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC3O15379 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC3O15379 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.29■□□□□ 0.04
HDAC3O15379 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.29■□□□□ 0.04
HDAC3O15379 FAAHP1-202ENST00000446499 1238 ntBASIC15.29■□□□□ 0.04
HDAC3O15379 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC15.29■□□□□ 0.04
HDAC3O15379 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC15.29■□□□□ 0.04
HDAC3O15379 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC15.29■□□□□ 0.04
HDAC3O15379 PDPK2P-202ENST00000562415 1191 ntBASIC15.29■□□□□ 0.04
HDAC3O15379 AP001005.1-201ENST00000571755 1248 ntBASIC15.29■□□□□ 0.04
HDAC3O15379 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC3O15379 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC3O15379 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC3O15379 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC15.29■□□□□ 0.04
HDAC3O15379 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.29■□□□□ 0.04
HDAC3O15379 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC3O15379 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC3O15379 UCKL1-AS1-201ENST00000623569 3602 ntBASIC15.29■□□□□ 0.04
HDAC3O15379 MIR600HG-201ENST00000449175 5984 ntBASIC15.29■□□□□ 0.04
HDAC3O15379 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC15.29■□□□□ 0.04
HDAC3O15379 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC3O15379 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
HDAC3O15379 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC3O15379 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
HDAC3O15379 AC139749.1-202ENST00000617529 3139 ntBASIC15.29■□□□□ 0.04
HDAC3O15379 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC3O15379 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC3O15379 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDAC3O15379 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC15.29■□□□□ 0.04
HDAC3O15379 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC15.29■□□□□ 0.04
HDAC3O15379 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
HDAC3O15379 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
HDAC3O15379 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms