Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 RNU1-114P-201ENST00000365297 166 ntBASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 FAM8A4P-201ENST00000435433 1213 ntBASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 RN7SL8P-201ENST00000461771 266 ntBASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 RN7SL713P-201ENST00000582127 302 ntBASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 REXO1L1P-202ENST00000608646 1974 ntBASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
ZC3H4Q9UPT8 ANKRD30BP2-201ENST00000435744 1610 ntBASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 KRT18P66-201ENST00000452970 1269 ntBASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 AC103691.2-201ENST00000618824 433 ntBASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 AL805961.1-203ENST00000641078 1258 ntBASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ZC3H4Q9UPT8 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ZC3H4Q9UPT8 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZC3H4Q9UPT8 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ZC3H4Q9UPT8 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
ZC3H4Q9UPT8 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZC3H4Q9UPT8 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZC3H4Q9UPT8 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC18.77■□□□□ 0.6
ZC3H4Q9UPT8 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
ZC3H4Q9UPT8 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZC3H4Q9UPT8 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
ZC3H4Q9UPT8 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ZC3H4Q9UPT8 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC18.77■□□□□ 0.6
ZC3H4Q9UPT8 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZC3H4Q9UPT8 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC18.77■□□□□ 0.6
ZC3H4Q9UPT8 CEP164P1-201ENST00000455142 418 ntBASIC18.77■□□□□ 0.6
ZC3H4Q9UPT8 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC18.77■□□□□ 0.6
ZC3H4Q9UPT8 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZC3H4Q9UPT8 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC18.77■□□□□ 0.6
ZC3H4Q9UPT8 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC18.77■□□□□ 0.6
ZC3H4Q9UPT8 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC18.77■□□□□ 0.6
ZC3H4Q9UPT8 AC006453.1-201ENST00000636037 1257 ntBASIC18.77■□□□□ 0.6
ZC3H4Q9UPT8 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms