Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NKX3-1Q99801 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NKX3-1Q99801 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
NKX3-1Q99801 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
NKX3-1Q99801 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NKX3-1Q99801 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
NKX3-1Q99801 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
NKX3-1Q99801 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC13.78□□□□□ -0.2
NKX3-1Q99801 UCKL1-AS1-201ENST00000623569 3602 ntBASIC13.78□□□□□ -0.2
NKX3-1Q99801 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NKX3-1Q99801 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NKX3-1Q99801 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
NKX3-1Q99801 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
NKX3-1Q99801 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NKX3-1Q99801 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC13.78□□□□□ -0.2
NKX3-1Q99801 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
NKX3-1Q99801 OR2I1P-209ENST00000641730 5365 ntBASIC13.78□□□□□ -0.2
NKX3-1Q99801 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NKX3-1Q99801 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC13.78□□□□□ -0.2
NKX3-1Q99801 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
NKX3-1Q99801 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NKX3-1Q99801 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC13.78□□□□□ -0.2
NKX3-1Q99801 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
NKX3-1Q99801 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
NKX3-1Q99801 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NKX3-1Q99801 MIR1233-2-201ENST00000408138 82 ntBASIC13.78□□□□□ -0.2
NKX3-1Q99801 MIR1233-1-201ENST00000408722 82 ntBASIC13.78□□□□□ -0.2
NKX3-1Q99801 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC13.78□□□□□ -0.2
NKX3-1Q99801 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
NKX3-1Q99801 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC13.78□□□□□ -0.2
NKX3-1Q99801 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC13.78□□□□□ -0.2
NKX3-1Q99801 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC13.78□□□□□ -0.2
NKX3-1Q99801 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
NKX3-1Q99801 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC13.78□□□□□ -0.2
NKX3-1Q99801 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC13.78□□□□□ -0.2
NKX3-1Q99801 AL513190.1-201ENST00000621254 727 ntBASIC13.78□□□□□ -0.2
NKX3-1Q99801 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NKX3-1Q99801 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC13.78□□□□□ -0.2
NKX3-1Q99801 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC13.78□□□□□ -0.2
NKX3-1Q99801 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
NKX3-1Q99801 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC13.78□□□□□ -0.2
NKX3-1Q99801 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC13.78□□□□□ -0.2
NKX3-1Q99801 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
NKX3-1Q99801 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
NKX3-1Q99801 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC13.78□□□□□ -0.2
NKX3-1Q99801 AP001282.1-201ENST00000531301 1499 ntBASIC13.78□□□□□ -0.2
NKX3-1Q99801 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC13.78□□□□□ -0.2
NKX3-1Q99801 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NKX3-1Q99801 BNIP3P1-202ENST00000550043 1585 ntBASIC13.78□□□□□ -0.2
NKX3-1Q99801 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NKX3-1Q99801 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NKX3-1Q99801 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
NKX3-1Q99801 AC015656.1-201ENST00000624209 3578 ntBASIC13.78□□□□□ -0.2
NKX3-1Q99801 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
NKX3-1Q99801 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NKX3-1Q99801 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
NKX3-1Q99801 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC13.78□□□□□ -0.2
NKX3-1Q99801 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC13.78□□□□□ -0.2
NKX3-1Q99801 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
NKX3-1Q99801 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NKX3-1Q99801 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NKX3-1Q99801 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
NKX3-1Q99801 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
NKX3-1Q99801 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
NKX3-1Q99801 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.2
NKX3-1Q99801 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
NKX3-1Q99801 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
NKX3-1Q99801 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC13.77□□□□□ -0.2
NKX3-1Q99801 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX3-1Q99801 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX3-1Q99801 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX3-1Q99801 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX3-1Q99801 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX3-1Q99801 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
NKX3-1Q99801 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX3-1Q99801 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX3-1Q99801 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX3-1Q99801 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC13.77□□□□□ -0.21
NKX3-1Q99801 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC13.77□□□□□ -0.21
NKX3-1Q99801 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX3-1Q99801 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
NKX3-1Q99801 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
NKX3-1Q99801 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
NKX3-1Q99801 LBH-204ENST00000406087 559 ntTSL 4 BASIC13.77□□□□□ -0.21
NKX3-1Q99801 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC13.77□□□□□ -0.21
NKX3-1Q99801 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX3-1Q99801 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
NKX3-1Q99801 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
NKX3-1Q99801 AC245100.5-201ENST00000452108 331 ntBASIC13.77□□□□□ -0.21
NKX3-1Q99801 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
NKX3-1Q99801 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC13.77□□□□□ -0.21
NKX3-1Q99801 FOXO1B-201ENST00000504678 1527 ntBASIC13.77□□□□□ -0.21
NKX3-1Q99801 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
NKX3-1Q99801 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC13.77□□□□□ -0.21
NKX3-1Q99801 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC13.77□□□□□ -0.21
NKX3-1Q99801 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms