Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
CCDC88AQ3V6T2 HLA-C-210ENST00000640219 976 ntBASIC18.85■□□□□ 0.61
CCDC88AQ3V6T2 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC88AQ3V6T2 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC88AQ3V6T2 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC88AQ3V6T2 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
CCDC88AQ3V6T2 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC88AQ3V6T2 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC88AQ3V6T2 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC88AQ3V6T2 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC88AQ3V6T2 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC88AQ3V6T2 AC018695.7-201ENST00000624587 2492 ntBASIC18.85■□□□□ 0.61
CCDC88AQ3V6T2 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
CCDC88AQ3V6T2 AC084018.2-201ENST00000613093 2607 ntBASIC18.85■□□□□ 0.61
CCDC88AQ3V6T2 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC88AQ3V6T2 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC88AQ3V6T2 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC88AQ3V6T2 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC18.84■□□□□ 0.61
CCDC88AQ3V6T2 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CCDC88AQ3V6T2 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CCDC88AQ3V6T2 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC88AQ3V6T2 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC18.84■□□□□ 0.61
CCDC88AQ3V6T2 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC18.84■□□□□ 0.61
CCDC88AQ3V6T2 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC18.84■□□□□ 0.61
CCDC88AQ3V6T2 AP001002.3-201ENST00000623482 206 ntBASIC18.84■□□□□ 0.61
CCDC88AQ3V6T2 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CCDC88AQ3V6T2 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC88AQ3V6T2 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC88AQ3V6T2 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC88AQ3V6T2 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC88AQ3V6T2 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC88AQ3V6T2 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC88AQ3V6T2 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC88AQ3V6T2 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC88AQ3V6T2 AC125604.1-201ENST00000496255 707 ntBASIC18.84■□□□□ 0.61
CCDC88AQ3V6T2 MARK2P5-201ENST00000507649 634 ntBASIC18.84■□□□□ 0.61
CCDC88AQ3V6T2 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC18.84■□□□□ 0.61
CCDC88AQ3V6T2 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
CCDC88AQ3V6T2 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC18.84■□□□□ 0.61
CCDC88AQ3V6T2 BX539320.1-201ENST00000623759 877 ntBASIC18.84■□□□□ 0.61
CCDC88AQ3V6T2 AL645728.2-202ENST00000641679 227 ntBASIC18.84■□□□□ 0.61
CCDC88AQ3V6T2 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC88AQ3V6T2 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC88AQ3V6T2 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
CCDC88AQ3V6T2 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
CCDC88AQ3V6T2 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC88AQ3V6T2 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC18.83■□□□□ 0.61
CCDC88AQ3V6T2 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC88AQ3V6T2 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.83■□□□□ 0.61
CCDC88AQ3V6T2 PCDHB19P-201ENST00000570871 2371 ntBASIC18.83■□□□□ 0.61
CCDC88AQ3V6T2 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC88AQ3V6T2 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC88AQ3V6T2 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC88AQ3V6T2 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC88AQ3V6T2 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
CCDC88AQ3V6T2 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC88AQ3V6T2 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC18.83■□□□□ 0.6
CCDC88AQ3V6T2 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC88AQ3V6T2 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC18.83■□□□□ 0.6
CCDC88AQ3V6T2 AL353637.1-201ENST00000451571 732 ntBASIC18.83■□□□□ 0.6
CCDC88AQ3V6T2 IGLV3-15-201ENST00000518356 244 ntBASIC18.83■□□□□ 0.6
CCDC88AQ3V6T2 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC18.83■□□□□ 0.6
CCDC88AQ3V6T2 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC18.83■□□□□ 0.6
CCDC88AQ3V6T2 MIR4783-201ENST00000580343 82 ntBASIC18.83■□□□□ 0.6
CCDC88AQ3V6T2 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC18.83■□□□□ 0.6
CCDC88AQ3V6T2 AC244157.2-201ENST00000616239 1006 ntBASIC18.83■□□□□ 0.6
CCDC88AQ3V6T2 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC88AQ3V6T2 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC88AQ3V6T2 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 SNX21-203ENST00000372541 771 ntTSL 2 BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 AC012618.1-201ENST00000461223 412 ntBASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 RNMTL1P1-201ENST00000454103 560 ntBASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 AC024681.1-201ENST00000521917 487 ntBASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms