Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH6P52701 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH6P52701 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC21.37■■□□□ 1.01
MSH6P52701 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
MSH6P52701 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH6P52701 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH6P52701 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH6P52701 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH6P52701 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
MSH6P52701 AC018892.3-201ENST00000623986 2499 ntBASIC21.37■■□□□ 1.01
MSH6P52701 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC21.37■■□□□ 1.01
MSH6P52701 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
MSH6P52701 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH6P52701 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
MSH6P52701 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC21.36■■□□□ 1.01
MSH6P52701 EIF3FP3-201ENST00000434851 1086 ntBASIC21.36■■□□□ 1.01
MSH6P52701 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
MSH6P52701 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
MSH6P52701 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC21.36■■□□□ 1.01
MSH6P52701 AC005357.2-202ENST00000590507 1060 ntBASIC21.36■■□□□ 1.01
MSH6P52701 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC21.36■■□□□ 1.01
MSH6P52701 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH6P52701 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC21.36■■□□□ 1.01
MSH6P52701 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
MSH6P52701 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH6P52701 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC21.36■■□□□ 1.01
MSH6P52701 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
MSH6P52701 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC21.36■■□□□ 1.01
MSH6P52701 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
MSH6P52701 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH6P52701 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC21.36■■□□□ 1.01
MSH6P52701 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH6P52701 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
MSH6P52701 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH6P52701 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
MSH6P52701 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH6P52701 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH6P52701 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH6P52701 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH6P52701 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH6P52701 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
MSH6P52701 MIR1227-201ENST00000408484 88 ntBASIC21.36■■□□□ 1.01
MSH6P52701 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC21.36■■□□□ 1.01
MSH6P52701 AC090857.1-201ENST00000527400 390 ntBASIC21.36■■□□□ 1.01
MSH6P52701 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC21.36■■□□□ 1.01
MSH6P52701 AL136295.7-201ENST00000619226 1200 ntBASIC21.36■■□□□ 1.01
MSH6P52701 AC020916.1-201ENST00000587762 1774 ntBASIC21.35■■□□□ 1.01
MSH6P52701 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
MSH6P52701 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH6P52701 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC21.35■■□□□ 1.01
MSH6P52701 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
MSH6P52701 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
MSH6P52701 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH6P52701 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC21.35■■□□□ 1.01
MSH6P52701 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC21.35■■□□□ 1.01
MSH6P52701 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
MSH6P52701 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
MSH6P52701 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH6P52701 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH6P52701 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC21.35■■□□□ 1.01
MSH6P52701 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
MSH6P52701 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH6P52701 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
MSH6P52701 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC21.35■■□□□ 1.01
MSH6P52701 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH6P52701 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC21.35■■□□□ 1.01
MSH6P52701 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
MSH6P52701 AMT-224ENST00000635808 1610 ntTSL 5 BASIC21.35■■□□□ 1.01
MSH6P52701 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
MSH6P52701 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
MSH6P52701 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH6P52701 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
MSH6P52701 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH6P52701 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC21.35■■□□□ 1.01
MSH6P52701 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH6P52701 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC21.35■■□□□ 1.01
MSH6P52701 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC21.35■■□□□ 1.01
MSH6P52701 AC090164.2-201ENST00000611487 516 ntBASIC21.35■■□□□ 1.01
MSH6P52701 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC21.35■■□□□ 1.01
MSH6P52701 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
MSH6P52701 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
MSH6P52701 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
MSH6P52701 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH6P52701 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC21.34■■□□□ 1.01
MSH6P52701 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH6P52701 AD000864.1-201ENST00000624076 2295 ntBASIC21.34■■□□□ 1.01
MSH6P52701 AC025271.4-201ENST00000621477 1726 ntBASIC21.34■■□□□ 1.01
MSH6P52701 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
MSH6P52701 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
MSH6P52701 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH6P52701 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC21.34■■□□□ 1.01
MSH6P52701 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH6P52701 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH6P52701 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
MSH6P52701 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
MSH6P52701 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
MSH6P52701 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH6P52701 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
MSH6P52701 AC106886.4-201ENST00000623557 2502 ntBASIC21.34■■□□□ 1.01
MSH6P52701 AL645937.2-201ENST00000396808 931 ntBASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms