Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CXCL12P48061 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC15.45■□□□□ 0.06
CXCL12P48061 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CXCL12P48061 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
CXCL12P48061 AC006449.6-201ENST00000612330 2296 ntBASIC15.45■□□□□ 0.06
CXCL12P48061 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
CXCL12P48061 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CXCL12P48061 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
CXCL12P48061 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC15.44■□□□□ 0.06
CXCL12P48061 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CXCL12P48061 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
CXCL12P48061 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CXCL12P48061 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CXCL12P48061 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC15.44■□□□□ 0.06
CXCL12P48061 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CXCL12P48061 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CXCL12P48061 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
CXCL12P48061 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
CXCL12P48061 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CXCL12P48061 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
CXCL12P48061 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC15.44■□□□□ 0.06
CXCL12P48061 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC15.44■□□□□ 0.06
CXCL12P48061 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
CXCL12P48061 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
CXCL12P48061 AL645937.2-201ENST00000396808 931 ntBASIC15.44■□□□□ 0.06
CXCL12P48061 CRCP-204ENST00000398684 492 ntTSL 2 BASIC15.44■□□□□ 0.06
CXCL12P48061 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC15.44■□□□□ 0.06
CXCL12P48061 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC15.44■□□□□ 0.06
CXCL12P48061 FTLP10-202ENST00000505798 471 ntBASIC15.44■□□□□ 0.06
CXCL12P48061 MBP-227ENST00000526111 581 ntTSL 4 BASIC15.44■□□□□ 0.06
CXCL12P48061 EHF-205ENST00000527935 557 ntTSL 2 BASIC15.44■□□□□ 0.06
CXCL12P48061 MIR4313-201ENST00000580760 101 ntBASIC15.44■□□□□ 0.06
CXCL12P48061 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC15.44■□□□□ 0.06
CXCL12P48061 OR10B1P-201ENST00000601666 907 ntBASIC15.44■□□□□ 0.06
CXCL12P48061 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC15.44■□□□□ 0.06
CXCL12P48061 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC15.44■□□□□ 0.06
CXCL12P48061 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.44■□□□□ 0.06
CXCL12P48061 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.44■□□□□ 0.06
CXCL12P48061 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
CXCL12P48061 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CXCL12P48061 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
CXCL12P48061 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CXCL12P48061 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
CXCL12P48061 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
CXCL12P48061 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CXCL12P48061 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CXCL12P48061 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CXCL12P48061 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CXCL12P48061 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
CXCL12P48061 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
CXCL12P48061 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CXCL12P48061 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC15.43■□□□□ 0.06
CXCL12P48061 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
CXCL12P48061 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.06
CXCL12P48061 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CXCL12P48061 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CXCL12P48061 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CXCL12P48061 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC15.43■□□□□ 0.06
CXCL12P48061 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CXCL12P48061 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CXCL12P48061 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CXCL12P48061 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CXCL12P48061 IGF1-203ENST00000392904 761 ntTSL 5 BASIC15.43■□□□□ 0.06
CXCL12P48061 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CXCL12P48061 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC15.43■□□□□ 0.06
CXCL12P48061 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CXCL12P48061 AC011742.3-201ENST00000439053 820 ntBASIC15.43■□□□□ 0.06
CXCL12P48061 MSRA-203ENST00000441698 788 ntTSL 2 BASIC15.43■□□□□ 0.06
CXCL12P48061 AC021723.1-201ENST00000486306 515 ntBASIC15.43■□□□□ 0.06
CXCL12P48061 AC004066.1-201ENST00000502488 802 ntBASIC15.43■□□□□ 0.06
CXCL12P48061 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC15.43■□□□□ 0.06
CXCL12P48061 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC15.43■□□□□ 0.06
CXCL12P48061 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC15.43■□□□□ 0.06
CXCL12P48061 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC15.43■□□□□ 0.06
CXCL12P48061 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC15.43■□□□□ 0.06
CXCL12P48061 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
CXCL12P48061 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC15.43■□□□□ 0.06
CXCL12P48061 AL023803.2-201ENST00000620080 638 ntBASIC15.43■□□□□ 0.06
CXCL12P48061 AC100757.4-201ENST00000626934 759 ntBASIC15.43■□□□□ 0.06
CXCL12P48061 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CXCL12P48061 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CXCL12P48061 KRT8P4-201ENST00000509735 1454 ntBASIC15.43■□□□□ 0.06
CXCL12P48061 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC15.43■□□□□ 0.06
CXCL12P48061 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC15.43■□□□□ 0.06
CXCL12P48061 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CXCL12P48061 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CXCL12P48061 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CXCL12P48061 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CXCL12P48061 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC15.43■□□□□ 0.06
CXCL12P48061 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.43■□□□□ 0.06
CXCL12P48061 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CXCL12P48061 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CXCL12P48061 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
CXCL12P48061 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
CXCL12P48061 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
CXCL12P48061 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.06
CXCL12P48061 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CXCL12P48061 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC15.43■□□□□ 0.06
CXCL12P48061 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
CXCL12P48061 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms