Protein–RNA interactions for Protein: P41273

TNFSF9, Tumor necrosis factor ligand superfamily member 9, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9P41273 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.91■□□□□ 0.3
TNFSF9P41273 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TNFSF9P41273 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TNFSF9P41273 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
TNFSF9P41273 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TNFSF9P41273 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TNFSF9P41273 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TNFSF9P41273 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TNFSF9P41273 AC136621.1-201ENST00000624017 2304 ntBASIC16.91■□□□□ 0.3
TNFSF9P41273 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TNFSF9P41273 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
TNFSF9P41273 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TNFSF9P41273 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC16.9■□□□□ 0.3
TNFSF9P41273 AC020658.6-201ENST00000623564 1870 ntBASIC16.9■□□□□ 0.3
TNFSF9P41273 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC16.9■□□□□ 0.3
TNFSF9P41273 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TNFSF9P41273 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TNFSF9P41273 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TNFSF9P41273 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
TNFSF9P41273 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC16.9■□□□□ 0.3
TNFSF9P41273 DRD5P1-201ENST00000456605 1438 ntBASIC16.9■□□□□ 0.3
TNFSF9P41273 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TNFSF9P41273 CU639417.3-201ENST00000624240 1404 ntBASIC16.9■□□□□ 0.3
TNFSF9P41273 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TNFSF9P41273 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC16.9■□□□□ 0.3
TNFSF9P41273 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TNFSF9P41273 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TNFSF9P41273 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TNFSF9P41273 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC16.9■□□□□ 0.3
TNFSF9P41273 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16.9■□□□□ 0.3
TNFSF9P41273 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC16.9■□□□□ 0.3
TNFSF9P41273 GAPDHP21-201ENST00000450301 1010 ntBASIC16.9■□□□□ 0.3
TNFSF9P41273 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
TNFSF9P41273 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC16.9■□□□□ 0.3
TNFSF9P41273 AC124283.3-201ENST00000570869 594 ntBASIC16.9■□□□□ 0.3
TNFSF9P41273 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC16.9■□□□□ 0.3
TNFSF9P41273 AC025181.2-201ENST00000606994 802 ntBASIC16.9■□□□□ 0.3
TNFSF9P41273 RPSAP52-203ENST00000622976 1023 ntBASIC16.9■□□□□ 0.3
TNFSF9P41273 AL033527.5-201ENST00000641382 801 ntBASIC16.9■□□□□ 0.3
TNFSF9P41273 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC16.9■□□□□ 0.3
TNFSF9P41273 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
TNFSF9P41273 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
TNFSF9P41273 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC16.9■□□□□ 0.3
TNFSF9P41273 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TNFSF9P41273 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.9■□□□□ 0.3
TNFSF9P41273 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TNFSF9P41273 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TNFSF9P41273 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TNFSF9P41273 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
TNFSF9P41273 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
TNFSF9P41273 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
TNFSF9P41273 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.89■□□□□ 0.3
TNFSF9P41273 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TNFSF9P41273 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC16.89■□□□□ 0.29
TNFSF9P41273 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TNFSF9P41273 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TNFSF9P41273 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TNFSF9P41273 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TNFSF9P41273 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TNFSF9P41273 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.89■□□□□ 0.29
TNFSF9P41273 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
TNFSF9P41273 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
TNFSF9P41273 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
TNFSF9P41273 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
TNFSF9P41273 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TNFSF9P41273 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TNFSF9P41273 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
TNFSF9P41273 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC16.89■□□□□ 0.29
TNFSF9P41273 AC134915.1-201ENST00000426461 574 ntBASIC16.89■□□□□ 0.29
TNFSF9P41273 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TNFSF9P41273 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC16.89■□□□□ 0.29
TNFSF9P41273 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC16.89■□□□□ 0.29
TNFSF9P41273 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC16.89■□□□□ 0.29
TNFSF9P41273 AC120045.2-201ENST00000567334 178 ntBASIC16.89■□□□□ 0.29
TNFSF9P41273 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC16.89■□□□□ 0.29
TNFSF9P41273 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
TNFSF9P41273 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
TNFSF9P41273 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
TNFSF9P41273 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC16.89■□□□□ 0.29
TNFSF9P41273 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.89■□□□□ 0.29
TNFSF9P41273 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
TNFSF9P41273 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
TNFSF9P41273 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TNFSF9P41273 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TNFSF9P41273 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.89■□□□□ 0.29
TNFSF9P41273 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TNFSF9P41273 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC16.89■□□□□ 0.29
TNFSF9P41273 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
TNFSF9P41273 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
TNFSF9P41273 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TNFSF9P41273 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TNFSF9P41273 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.89■□□□□ 0.29
TNFSF9P41273 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
TNFSF9P41273 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TNFSF9P41273 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TNFSF9P41273 STK33-217ENST00000534493 1895 ntTSL 2 BASIC16.88■□□□□ 0.29
TNFSF9P41273 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.88■□□□□ 0.29
TNFSF9P41273 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
TNFSF9P41273 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
TNFSF9P41273 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms