Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SDC1P18827 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SDC1P18827 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SDC1P18827 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
SDC1P18827 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SDC1P18827 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SDC1P18827 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SDC1P18827 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC14.96□□□□□ -0.01
SDC1P18827 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SDC1P18827 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
SDC1P18827 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SDC1P18827 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SDC1P18827 RPL30-202ENST00000396070 440 ntTSL 2 BASIC14.96□□□□□ -0.01
SDC1P18827 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
SDC1P18827 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SDC1P18827 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC14.96□□□□□ -0.01
SDC1P18827 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC14.96□□□□□ -0.01
SDC1P18827 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
SDC1P18827 AC084364.1-201ENST00000551967 1556 ntBASIC14.96□□□□□ -0.01
SDC1P18827 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.01
SDC1P18827 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
SDC1P18827 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC14.96□□□□□ -0.01
SDC1P18827 CMC2-214ENST00000565925 640 ntTSL 5 BASIC14.96□□□□□ -0.01
SDC1P18827 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SDC1P18827 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC14.96□□□□□ -0.01
SDC1P18827 MIR4453-201ENST00000584019 89 ntBASIC14.96□□□□□ -0.01
SDC1P18827 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.96□□□□□ -0.01
SDC1P18827 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC14.96□□□□□ -0.01
SDC1P18827 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SDC1P18827 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SDC1P18827 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
SDC1P18827 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC14.96□□□□□ -0.01
SDC1P18827 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC14.96□□□□□ -0.02
SDC1P18827 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
SDC1P18827 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
SDC1P18827 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
SDC1P18827 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
SDC1P18827 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
SDC1P18827 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
SDC1P18827 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC14.95□□□□□ -0.02
SDC1P18827 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SDC1P18827 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
SDC1P18827 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SDC1P18827 GSN-203ENST00000373808 2664 ntTSL 2 BASIC14.95□□□□□ -0.02
SDC1P18827 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SDC1P18827 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC14.95□□□□□ -0.02
SDC1P18827 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SDC1P18827 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SDC1P18827 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
SDC1P18827 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
SDC1P18827 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
SDC1P18827 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SDC1P18827 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SDC1P18827 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC14.95□□□□□ -0.02
SDC1P18827 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
SDC1P18827 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SDC1P18827 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC14.95□□□□□ -0.02
SDC1P18827 UPF3AP3-201ENST00000420996 769 ntBASIC14.95□□□□□ -0.02
SDC1P18827 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SDC1P18827 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC14.95□□□□□ -0.02
SDC1P18827 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC14.95□□□□□ -0.02
SDC1P18827 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC14.95□□□□□ -0.02
SDC1P18827 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SDC1P18827 AL079307.3-201ENST00000556114 283 ntBASIC14.95□□□□□ -0.02
SDC1P18827 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SDC1P18827 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.95□□□□□ -0.02
SDC1P18827 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC14.95□□□□□ -0.02
SDC1P18827 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
SDC1P18827 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC14.95□□□□□ -0.02
SDC1P18827 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SDC1P18827 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
SDC1P18827 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SDC1P18827 GPI-205ENST00000586425 1799 ntTSL 5 BASIC14.95□□□□□ -0.02
SDC1P18827 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SDC1P18827 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SDC1P18827 AMT-224ENST00000635808 1610 ntTSL 5 BASIC14.95□□□□□ -0.02
SDC1P18827 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
SDC1P18827 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SDC1P18827 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SDC1P18827 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SDC1P18827 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
SDC1P18827 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDC1P18827 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SDC1P18827 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SDC1P18827 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDC1P18827 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDC1P18827 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDC1P18827 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC14.94□□□□□ -0.02
SDC1P18827 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
SDC1P18827 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDC1P18827 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDC1P18827 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC14.94□□□□□ -0.02
SDC1P18827 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDC1P18827 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDC1P18827 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDC1P18827 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDC1P18827 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC14.94□□□□□ -0.02
SDC1P18827 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDC1P18827 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDC1P18827 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms