Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HMGA1P17096 NUS1P3-201ENST00000423502 862 ntBASIC16.12■□□□□ 0.17
HMGA1P17096 FAM21FP-201ENST00000426241 1131 ntBASIC16.12■□□□□ 0.17
HMGA1P17096 ACTBP11-201ENST00000436287 1126 ntBASIC16.12■□□□□ 0.17
HMGA1P17096 AC078819.1-201ENST00000547454 765 ntBASIC16.12■□□□□ 0.17
HMGA1P17096 AC012085.1-201ENST00000548270 765 ntBASIC16.12■□□□□ 0.17
HMGA1P17096 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC16.12■□□□□ 0.17
HMGA1P17096 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC16.12■□□□□ 0.17
HMGA1P17096 AL645728.2-202ENST00000641679 227 ntBASIC16.12■□□□□ 0.17
HMGA1P17096 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGA1P17096 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGA1P17096 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.12■□□□□ 0.17
HMGA1P17096 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGA1P17096 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGA1P17096 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGA1P17096 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.12■□□□□ 0.17
HMGA1P17096 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC16.12■□□□□ 0.17
HMGA1P17096 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC16.12■□□□□ 0.17
HMGA1P17096 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HMGA1P17096 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGA1P17096 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HMGA1P17096 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
HMGA1P17096 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
HMGA1P17096 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
HMGA1P17096 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGA1P17096 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
HMGA1P17096 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGA1P17096 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HMGA1P17096 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HMGA1P17096 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGA1P17096 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC16.11■□□□□ 0.17
HMGA1P17096 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC16.11■□□□□ 0.17
HMGA1P17096 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC16.11■□□□□ 0.17
HMGA1P17096 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC16.11■□□□□ 0.17
HMGA1P17096 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGA1P17096 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGA1P17096 TPO-206ENST00000382269 1155 ntTSL 5 BASIC16.11■□□□□ 0.17
HMGA1P17096 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGA1P17096 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC16.11■□□□□ 0.17
HMGA1P17096 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC16.11■□□□□ 0.17
HMGA1P17096 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HMGA1P17096 PACS1-203ENST00000524815 628 ntTSL 4 BASIC16.11■□□□□ 0.17
HMGA1P17096 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC16.11■□□□□ 0.17
HMGA1P17096 MIR4538-201ENST00000581377 78 ntBASIC16.11■□□□□ 0.17
HMGA1P17096 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC16.11■□□□□ 0.17
HMGA1P17096 PCDHA1-201ENST00000378133 2726 ntBASIC16.11■□□□□ 0.17
HMGA1P17096 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.11■□□□□ 0.17
HMGA1P17096 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGA1P17096 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGA1P17096 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
HMGA1P17096 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGA1P17096 PKD1P1-201ENST00000458669 6805 ntBASIC16.11■□□□□ 0.17
HMGA1P17096 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGA1P17096 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGA1P17096 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HMGA1P17096 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGA1P17096 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGA1P17096 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.11■□□□□ 0.17
HMGA1P17096 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC16.11■□□□□ 0.17
HMGA1P17096 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGA1P17096 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGA1P17096 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGA1P17096 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGA1P17096 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGA1P17096 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.1■□□□□ 0.17
HMGA1P17096 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC16.1■□□□□ 0.17
HMGA1P17096 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC16.1■□□□□ 0.17
HMGA1P17096 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.1■□□□□ 0.17
HMGA1P17096 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGA1P17096 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGA1P17096 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGA1P17096 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC16.1■□□□□ 0.17
HMGA1P17096 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGA1P17096 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
HMGA1P17096 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGA1P17096 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC16.1■□□□□ 0.17
HMGA1P17096 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
HMGA1P17096 AL355994.2-201ENST00000447882 704 ntBASIC16.1■□□□□ 0.17
HMGA1P17096 AC022494.1-201ENST00000466044 728 ntBASIC16.1■□□□□ 0.17
HMGA1P17096 AC004066.1-201ENST00000502488 802 ntBASIC16.1■□□□□ 0.17
HMGA1P17096 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC16.1■□□□□ 0.17
HMGA1P17096 DUX4L45-201ENST00000566406 1057 ntBASIC16.1■□□□□ 0.17
HMGA1P17096 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC16.1■□□□□ 0.17
HMGA1P17096 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.1■□□□□ 0.17
HMGA1P17096 INO80C-210ENST00000590757 595 ntTSL 2 BASIC16.1■□□□□ 0.17
HMGA1P17096 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGA1P17096 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC16.1■□□□□ 0.17
HMGA1P17096 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.1■□□□□ 0.17
HMGA1P17096 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGA1P17096 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
HMGA1P17096 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGA1P17096 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGA1P17096 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGA1P17096 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
HMGA1P17096 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC16.1■□□□□ 0.17
HMGA1P17096 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.1■□□□□ 0.17
HMGA1P17096 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGA1P17096 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HMGA1P17096 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGA1P17096 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms