Protein–RNA interactions for Protein: O76090

BEST1, Bestrophin-1, humanhuman

Predictions only

Length 585 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST1O76090 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BEST1O76090 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
BEST1O76090 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
BEST1O76090 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
BEST1O76090 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
BEST1O76090 AC063926.2-201ENST00000623766 1308 ntBASIC16.4■□□□□ 0.22
BEST1O76090 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.4■□□□□ 0.22
BEST1O76090 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BEST1O76090 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BEST1O76090 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BEST1O76090 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
BEST1O76090 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC16.4■□□□□ 0.22
BEST1O76090 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BEST1O76090 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.4■□□□□ 0.22
BEST1O76090 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
BEST1O76090 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
BEST1O76090 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
BEST1O76090 HNRNPA1P48-201ENST00000562726 1377 ntBASIC16.39■□□□□ 0.21
BEST1O76090 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
BEST1O76090 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BEST1O76090 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC16.39■□□□□ 0.21
BEST1O76090 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC16.39■□□□□ 0.21
BEST1O76090 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
BEST1O76090 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BEST1O76090 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
BEST1O76090 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BEST1O76090 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
BEST1O76090 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.39■□□□□ 0.21
BEST1O76090 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
BEST1O76090 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
BEST1O76090 GLI4-203ENST00000517468 963 ntTSL 5 BASIC16.39■□□□□ 0.21
BEST1O76090 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC16.39■□□□□ 0.21
BEST1O76090 AC120045.2-201ENST00000567334 178 ntBASIC16.39■□□□□ 0.21
BEST1O76090 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC16.39■□□□□ 0.21
BEST1O76090 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC16.39■□□□□ 0.21
BEST1O76090 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC16.39■□□□□ 0.21
BEST1O76090 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
BEST1O76090 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
BEST1O76090 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BEST1O76090 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
BEST1O76090 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
BEST1O76090 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BEST1O76090 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
BEST1O76090 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
BEST1O76090 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.39■□□□□ 0.21
BEST1O76090 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.39■□□□□ 0.21
BEST1O76090 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BEST1O76090 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
BEST1O76090 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BEST1O76090 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.38■□□□□ 0.21
BEST1O76090 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC16.38■□□□□ 0.21
BEST1O76090 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC16.38■□□□□ 0.21
BEST1O76090 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
BEST1O76090 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BEST1O76090 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BEST1O76090 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC16.38■□□□□ 0.21
BEST1O76090 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
BEST1O76090 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.38■□□□□ 0.21
BEST1O76090 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BEST1O76090 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
BEST1O76090 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC16.38■□□□□ 0.21
BEST1O76090 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BEST1O76090 AL512384.1-201ENST00000406683 331 ntBASIC16.38■□□□□ 0.21
BEST1O76090 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
BEST1O76090 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC16.38■□□□□ 0.21
BEST1O76090 TMEM14DP-201ENST00000422205 345 ntBASIC16.38■□□□□ 0.21
BEST1O76090 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC16.38■□□□□ 0.21
BEST1O76090 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC16.38■□□□□ 0.21
BEST1O76090 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC16.38■□□□□ 0.21
BEST1O76090 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
BEST1O76090 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC16.38■□□□□ 0.21
BEST1O76090 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC16.38■□□□□ 0.21
BEST1O76090 AC107373.2-201ENST00000607735 490 ntBASIC16.38■□□□□ 0.21
BEST1O76090 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.38■□□□□ 0.21
BEST1O76090 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC16.38■□□□□ 0.21
BEST1O76090 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
BEST1O76090 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
BEST1O76090 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.38■□□□□ 0.21
BEST1O76090 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
BEST1O76090 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
BEST1O76090 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
BEST1O76090 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
BEST1O76090 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.38■□□□□ 0.21
BEST1O76090 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BEST1O76090 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.38■□□□□ 0.21
BEST1O76090 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BEST1O76090 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BEST1O76090 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
BEST1O76090 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.38■□□□□ 0.21
BEST1O76090 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.38■□□□□ 0.21
BEST1O76090 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC16.38■□□□□ 0.21
BEST1O76090 AC105917.1-201ENST00000506637 2539 ntBASIC16.38■□□□□ 0.21
BEST1O76090 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.38■□□□□ 0.21
BEST1O76090 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
BEST1O76090 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
BEST1O76090 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
BEST1O76090 KRT8P22-201ENST00000562317 1415 ntBASIC16.37■□□□□ 0.21
BEST1O76090 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
BEST1O76090 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BEST1O76090 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms