Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC13.87□□□□□ -0.19
LMX1BO60663 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
LMX1BO60663 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
LMX1BO60663 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC13.87□□□□□ -0.19
LMX1BO60663 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC13.87□□□□□ -0.19
LMX1BO60663 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
LMX1BO60663 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
LMX1BO60663 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
LMX1BO60663 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
LMX1BO60663 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC13.87□□□□□ -0.19
LMX1BO60663 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LMX1BO60663 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LMX1BO60663 GSN-203ENST00000373808 2664 ntTSL 2 BASIC13.87□□□□□ -0.19
LMX1BO60663 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
LMX1BO60663 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
LMX1BO60663 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LMX1BO60663 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LMX1BO60663 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
LMX1BO60663 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LMX1BO60663 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC13.86□□□□□ -0.19
LMX1BO60663 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC13.86□□□□□ -0.19
LMX1BO60663 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC13.86□□□□□ -0.19
LMX1BO60663 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LMX1BO60663 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
LMX1BO60663 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LMX1BO60663 ZBTB45P2-201ENST00000452245 1531 ntBASIC13.86□□□□□ -0.19
LMX1BO60663 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LMX1BO60663 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
LMX1BO60663 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC13.86□□□□□ -0.19
LMX1BO60663 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
LMX1BO60663 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC13.86□□□□□ -0.19
LMX1BO60663 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LMX1BO60663 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC13.86□□□□□ -0.19
LMX1BO60663 FLII-221ENST00000578558 2377 ntTSL 5 BASIC13.86□□□□□ -0.19
LMX1BO60663 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LMX1BO60663 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
LMX1BO60663 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
LMX1BO60663 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LMX1BO60663 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LMX1BO60663 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
LMX1BO60663 MIR661-201ENST00000384842 89 ntBASIC13.86□□□□□ -0.19
LMX1BO60663 RAC2-204ENST00000406508 893 ntTSL 5 BASIC13.86□□□□□ -0.19
LMX1BO60663 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
LMX1BO60663 SPDYE14P-201ENST00000442619 822 ntBASIC13.86□□□□□ -0.19
LMX1BO60663 GAPDHP21-201ENST00000450301 1010 ntBASIC13.86□□□□□ -0.19
LMX1BO60663 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC13.86□□□□□ -0.19
LMX1BO60663 AC098859.1-201ENST00000502915 1238 ntBASIC13.86□□□□□ -0.19
LMX1BO60663 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC13.86□□□□□ -0.19
LMX1BO60663 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LMX1BO60663 PAM16-215ENST00000577031 548 ntTSL 4 BASIC13.86□□□□□ -0.19
LMX1BO60663 CECR7-204ENST00000609932 568 ntTSL 2 BASIC13.86□□□□□ -0.19
LMX1BO60663 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC13.86□□□□□ -0.19
LMX1BO60663 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC13.86□□□□□ -0.19
LMX1BO60663 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC13.86□□□□□ -0.19
LMX1BO60663 HFE2-206ENST00000634927 506 ntTSL 4 BASIC13.86□□□□□ -0.19
LMX1BO60663 AL358472.5-202ENST00000641448 1267 ntBASIC13.86□□□□□ -0.19
LMX1BO60663 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LMX1BO60663 AL136982.4-201ENST00000437689 1740 ntBASIC13.86□□□□□ -0.19
LMX1BO60663 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LMX1BO60663 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
LMX1BO60663 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC13.86□□□□□ -0.19
LMX1BO60663 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LMX1BO60663 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC13.86□□□□□ -0.19
LMX1BO60663 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC13.86□□□□□ -0.19
LMX1BO60663 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
LMX1BO60663 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC13.86□□□□□ -0.19
LMX1BO60663 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC13.86□□□□□ -0.19
LMX1BO60663 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LMX1BO60663 CICP24-201ENST00000605464 2705 ntBASIC13.85□□□□□ -0.19
LMX1BO60663 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LMX1BO60663 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC13.85□□□□□ -0.19
LMX1BO60663 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC13.85□□□□□ -0.19
LMX1BO60663 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
LMX1BO60663 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC13.85□□□□□ -0.19
LMX1BO60663 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
LMX1BO60663 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LMX1BO60663 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LMX1BO60663 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
LMX1BO60663 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
LMX1BO60663 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LMX1BO60663 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC13.85□□□□□ -0.19
LMX1BO60663 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
LMX1BO60663 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LMX1BO60663 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
LMX1BO60663 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
LMX1BO60663 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
LMX1BO60663 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
LMX1BO60663 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
LMX1BO60663 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LMX1BO60663 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC13.85□□□□□ -0.19
LMX1BO60663 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
LMX1BO60663 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC13.85□□□□□ -0.19
LMX1BO60663 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC13.85□□□□□ -0.19
LMX1BO60663 AC097493.3-201ENST00000509725 367 ntBASIC13.85□□□□□ -0.19
LMX1BO60663 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC13.85□□□□□ -0.19
LMX1BO60663 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC13.85□□□□□ -0.19
LMX1BO60663 AC027307.2-201ENST00000591252 911 ntBASIC13.85□□□□□ -0.19
LMX1BO60663 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LMX1BO60663 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC13.85□□□□□ -0.19
LMX1BO60663 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms