Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 FAM197Y7-201ENST00000432892 766 ntBASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 AC007969.1-201ENST00000433675 447 ntBASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 IGHJ2P-201ENST00000454480 60 ntBASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 SCARNA20.5-201ENST00000516991 142 ntBASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 AP001582.1-201ENST00000525856 295 ntBASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 AC078819.1-201ENST00000547454 765 ntBASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 AC012085.1-201ENST00000548270 765 ntBASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 AC107373.2-201ENST00000607735 490 ntBASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 GCK-202ENST00000345378 2421 ntTSL 2 BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 HLA-A-202ENST00000376806 1854 ntBASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.06■□□□□ 0
PCDHGA1Q9Y5H4 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC15.05■□□□□ 0
PCDHGA1Q9Y5H4 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.05■□□□□ 0
PCDHGA1Q9Y5H4 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
PCDHGA1Q9Y5H4 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC15.05■□□□□ 0
PCDHGA1Q9Y5H4 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
PCDHGA1Q9Y5H4 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ 0
PCDHGA1Q9Y5H4 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC15.05■□□□□ 0
PCDHGA1Q9Y5H4 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
PCDHGA1Q9Y5H4 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
PCDHGA1Q9Y5H4 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.05■□□□□ 0
PCDHGA1Q9Y5H4 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
PCDHGA1Q9Y5H4 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
PCDHGA1Q9Y5H4 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 AL133267.1-201ENST00000398220 340 ntBASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 AC097359.3-201ENST00000603982 1210 ntBASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
PCDHGA1Q9Y5H4 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC15.04■□□□□ -0
PCDHGA1Q9Y5H4 APOA2-204ENST00000464492 530 ntTSL 3 BASIC15.04■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms