Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC006449.5-201ENST00000610658 2098 ntBASIC29.52■■■□□ 2.32
SHROOM4Q9ULL8 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
SHROOM4Q9ULL8 CD8B2-202ENST00000417670 633 ntBASIC29.52■■■□□ 2.32
SHROOM4Q9ULL8 AC016700.1-201ENST00000429424 312 ntBASIC29.52■■■□□ 2.32
SHROOM4Q9ULL8 FNTAP2-201ENST00000430308 634 ntBASIC29.52■■■□□ 2.32
SHROOM4Q9ULL8 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC29.52■■■□□ 2.32
SHROOM4Q9ULL8 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC29.52■■■□□ 2.32
SHROOM4Q9ULL8 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
SHROOM4Q9ULL8 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC29.52■■■□□ 2.32
SHROOM4Q9ULL8 MIR5572-201ENST00000583188 137 ntBASIC29.52■■■□□ 2.32
SHROOM4Q9ULL8 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC29.52■■■□□ 2.32
SHROOM4Q9ULL8 AC107373.2-201ENST00000607735 490 ntBASIC29.52■■■□□ 2.32
SHROOM4Q9ULL8 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC29.52■■■□□ 2.32
SHROOM4Q9ULL8 AC138649.2-201ENST00000615886 705 ntBASIC29.52■■■□□ 2.32
SHROOM4Q9ULL8 AP001505.2-201ENST00000616815 443 ntBASIC29.52■■■□□ 2.32
SHROOM4Q9ULL8 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC29.52■■■□□ 2.32
SHROOM4Q9ULL8 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
SHROOM4Q9ULL8 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC29.52■■■□□ 2.32
SHROOM4Q9ULL8 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
SHROOM4Q9ULL8 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
SHROOM4Q9ULL8 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC29.52■■■□□ 2.32
SHROOM4Q9ULL8 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC29.51■■■□□ 2.32
SHROOM4Q9ULL8 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC29.51■■■□□ 2.32
SHROOM4Q9ULL8 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC29.51■■■□□ 2.32
SHROOM4Q9ULL8 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC29.51■■■□□ 2.31
SHROOM4Q9ULL8 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
SHROOM4Q9ULL8 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC29.51■■■□□ 2.31
SHROOM4Q9ULL8 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC29.51■■■□□ 2.31
SHROOM4Q9ULL8 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
SHROOM4Q9ULL8 PTPA-218ENST00000435132 618 ntTSL 2 BASIC29.51■■■□□ 2.31
SHROOM4Q9ULL8 CNN2P10-201ENST00000443067 918 ntBASIC29.51■■■□□ 2.31
SHROOM4Q9ULL8 HOMER2P2-201ENST00000451621 847 ntBASIC29.51■■■□□ 2.31
SHROOM4Q9ULL8 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC29.51■■■□□ 2.31
SHROOM4Q9ULL8 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC29.51■■■□□ 2.31
SHROOM4Q9ULL8 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC29.51■■■□□ 2.31
SHROOM4Q9ULL8 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC29.51■■■□□ 2.31
SHROOM4Q9ULL8 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
SHROOM4Q9ULL8 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC29.51■■■□□ 2.31
SHROOM4Q9ULL8 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC29.51■■■□□ 2.31
SHROOM4Q9ULL8 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC29.51■■■□□ 2.31
SHROOM4Q9ULL8 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
SHROOM4Q9ULL8 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC29.51■■■□□ 2.31
SHROOM4Q9ULL8 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC29.51■■■□□ 2.31
SHROOM4Q9ULL8 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC29.51■■■□□ 2.31
SHROOM4Q9ULL8 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC29.51■■■□□ 2.31
SHROOM4Q9ULL8 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC29.51■■■□□ 2.31
SHROOM4Q9ULL8 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
SHROOM4Q9ULL8 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
SHROOM4Q9ULL8 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC29.5■■■□□ 2.31
SHROOM4Q9ULL8 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
SHROOM4Q9ULL8 AL355334.1-201ENST00000417713 215 ntBASIC29.5■■■□□ 2.31
SHROOM4Q9ULL8 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC29.5■■■□□ 2.31
SHROOM4Q9ULL8 AC104982.3-201ENST00000581995 514 ntBASIC29.5■■■□□ 2.31
SHROOM4Q9ULL8 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC29.5■■■□□ 2.31
SHROOM4Q9ULL8 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC29.5■■■□□ 2.31
SHROOM4Q9ULL8 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC29.5■■■□□ 2.31
SHROOM4Q9ULL8 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
SHROOM4Q9ULL8 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
SHROOM4Q9ULL8 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC29.5■■■□□ 2.31
SHROOM4Q9ULL8 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC29.5■■■□□ 2.31
SHROOM4Q9ULL8 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
SHROOM4Q9ULL8 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
SHROOM4Q9ULL8 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
SHROOM4Q9ULL8 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC29.5■■■□□ 2.31
SHROOM4Q9ULL8 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
SHROOM4Q9ULL8 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC29.5■■■□□ 2.31
SHROOM4Q9ULL8 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
SHROOM4Q9ULL8 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC29.49■■■□□ 2.31
SHROOM4Q9ULL8 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
SHROOM4Q9ULL8 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
SHROOM4Q9ULL8 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
SHROOM4Q9ULL8 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC29.49■■■□□ 2.31
SHROOM4Q9ULL8 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC29.49■■■□□ 2.31
SHROOM4Q9ULL8 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC29.49■■■□□ 2.31
SHROOM4Q9ULL8 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC29.49■■■□□ 2.31
SHROOM4Q9ULL8 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
SHROOM4Q9ULL8 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC29.49■■■□□ 2.31
SHROOM4Q9ULL8 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC29.49■■■□□ 2.31
SHROOM4Q9ULL8 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
SHROOM4Q9ULL8 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
SHROOM4Q9ULL8 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
SHROOM4Q9ULL8 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
SHROOM4Q9ULL8 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC29.49■■■□□ 2.31
SHROOM4Q9ULL8 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC29.49■■■□□ 2.31
SHROOM4Q9ULL8 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC29.49■■■□□ 2.31
SHROOM4Q9ULL8 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
SHROOM4Q9ULL8 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
SHROOM4Q9ULL8 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC29.49■■■□□ 2.31
SHROOM4Q9ULL8 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC29.49■■■□□ 2.31
SHROOM4Q9ULL8 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
SHROOM4Q9ULL8 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
SHROOM4Q9ULL8 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC29.48■■■□□ 2.31
SHROOM4Q9ULL8 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC29.48■■■□□ 2.31
SHROOM4Q9ULL8 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC29.48■■■□□ 2.31
SHROOM4Q9ULL8 AC093813.1-201ENST00000605066 256 ntBASIC29.48■■■□□ 2.31
SHROOM4Q9ULL8 AP003419.4-201ENST00000616071 517 ntBASIC29.48■■■□□ 2.31
SHROOM4Q9ULL8 AC006453.4-201ENST00000636949 1252 ntBASIC29.48■■■□□ 2.31
SHROOM4Q9ULL8 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
SHROOM4Q9ULL8 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC29.48■■■□□ 2.31
SHROOM4Q9ULL8 BLK-205ENST00000529894 2017 ntTSL 5 BASIC29.48■■■□□ 2.31
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms