Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 KRT17P7-201ENST00000451704 1104 ntBASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 AC009407.1-201ENST00000568958 598 ntBASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 AL662799.1-202ENST00000614205 422 ntBASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 AL136379.1-201ENST00000623471 2642 ntBASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CUEDC1Q9NWM3 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 AC022144.1-201ENST00000602255 1580 ntBASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 MRPS18AP1-201ENST00000414458 589 ntBASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 COX5BP8-201ENST00000416911 349 ntBASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 MDH2-205ENST00000461263 648 ntTSL 2 BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 RN7SL692P-201ENST00000464677 288 ntBASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 NAA50-208ENST00000497255 789 ntTSL 5 BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 SSH2-210ENST00000582084 560 ntTSL 3 BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 LINC01115-203ENST00000606068 577 ntBASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 AC008738.7-201ENST00000609744 511 ntBASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.24■□□□□ 0.03
CUEDC1Q9NWM3 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CUEDC1Q9NWM3 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms