Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC19.36■□□□□ 0.69
SYNE4Q8N205 PFN2-215ENST00000497148 743 ntTSL 4 BASIC19.36■□□□□ 0.69
SYNE4Q8N205 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE4Q8N205 AP001258.2-201ENST00000529891 490 ntBASIC19.36■□□□□ 0.69
SYNE4Q8N205 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC19.36■□□□□ 0.69
SYNE4Q8N205 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
SYNE4Q8N205 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE4Q8N205 BX539320.1-201ENST00000623759 877 ntBASIC19.36■□□□□ 0.69
SYNE4Q8N205 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE4Q8N205 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE4Q8N205 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE4Q8N205 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
SYNE4Q8N205 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE4Q8N205 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE4Q8N205 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE4Q8N205 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
SYNE4Q8N205 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC19.36■□□□□ 0.69
SYNE4Q8N205 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE4Q8N205 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SYNE4Q8N205 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SYNE4Q8N205 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC19.35■□□□□ 0.69
SYNE4Q8N205 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SYNE4Q8N205 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE4Q8N205 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE4Q8N205 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE4Q8N205 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE4Q8N205 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE4Q8N205 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC19.35■□□□□ 0.69
SYNE4Q8N205 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE4Q8N205 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
SYNE4Q8N205 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
SYNE4Q8N205 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
SYNE4Q8N205 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE4Q8N205 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SYNE4Q8N205 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE4Q8N205 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE4Q8N205 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE4Q8N205 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC19.35■□□□□ 0.69
SYNE4Q8N205 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE4Q8N205 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE4Q8N205 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC19.35■□□□□ 0.69
SYNE4Q8N205 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE4Q8N205 AC104306.2-201ENST00000451877 341 ntBASIC19.35■□□□□ 0.69
SYNE4Q8N205 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC19.35■□□□□ 0.69
SYNE4Q8N205 PARP8-206ENST00000503665 572 ntTSL 4 BASIC19.35■□□□□ 0.69
SYNE4Q8N205 AHRR-211ENST00000515206 462 ntTSL 5 BASIC19.35■□□□□ 0.69
SYNE4Q8N205 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE4Q8N205 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC19.35■□□□□ 0.69
SYNE4Q8N205 AC023310.1-201ENST00000554836 735 ntBASIC19.35■□□□□ 0.69
SYNE4Q8N205 MIR4741-201ENST00000579822 90 ntBASIC19.35■□□□□ 0.69
SYNE4Q8N205 ETV2-208ENST00000621247 941 ntTSL 5 BASIC19.35■□□□□ 0.69
SYNE4Q8N205 AC138951.2-201ENST00000623455 1161 ntBASIC19.35■□□□□ 0.69
SYNE4Q8N205 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
SYNE4Q8N205 AC099398.1-201ENST00000567919 2776 ntBASIC19.35■□□□□ 0.69
SYNE4Q8N205 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC19.35■□□□□ 0.69
SYNE4Q8N205 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE4Q8N205 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE4Q8N205 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE4Q8N205 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SYNE4Q8N205 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC19.35■□□□□ 0.69
SYNE4Q8N205 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC19.34■□□□□ 0.69
SYNE4Q8N205 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE4Q8N205 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC19.34■□□□□ 0.69
SYNE4Q8N205 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE4Q8N205 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE4Q8N205 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE4Q8N205 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC19.34■□□□□ 0.69
SYNE4Q8N205 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC19.34■□□□□ 0.69
SYNE4Q8N205 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE4Q8N205 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE4Q8N205 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC19.34■□□□□ 0.69
SYNE4Q8N205 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE4Q8N205 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE4Q8N205 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC19.34■□□□□ 0.69
SYNE4Q8N205 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
SYNE4Q8N205 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
SYNE4Q8N205 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC19.34■□□□□ 0.69
SYNE4Q8N205 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
SYNE4Q8N205 MIR1202-201ENST00000408529 83 ntBASIC19.34■□□□□ 0.69
SYNE4Q8N205 KLF2P2-201ENST00000416807 1039 ntBASIC19.34■□□□□ 0.69
SYNE4Q8N205 CALR4P-201ENST00000431943 946 ntBASIC19.34■□□□□ 0.69
SYNE4Q8N205 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE4Q8N205 IGHJ2P-201ENST00000454480 60 ntBASIC19.34■□□□□ 0.69
SYNE4Q8N205 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
SYNE4Q8N205 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE4Q8N205 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE4Q8N205 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE4Q8N205 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE4Q8N205 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE4Q8N205 AL021578.1-201ENST00000613646 709 ntBASIC19.34■□□□□ 0.69
SYNE4Q8N205 GPR39-203ENST00000622084 900 ntTSL 5 BASIC19.34■□□□□ 0.69
SYNE4Q8N205 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC19.34■□□□□ 0.69
SYNE4Q8N205 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC19.34■□□□□ 0.69
SYNE4Q8N205 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC19.34■□□□□ 0.69
SYNE4Q8N205 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE4Q8N205 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE4Q8N205 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
SYNE4Q8N205 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
SYNE4Q8N205 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE4Q8N205 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms