Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PKNOX1P55347 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
PKNOX1P55347 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC15.5■□□□□ 0.07
PKNOX1P55347 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC15.5■□□□□ 0.07
PKNOX1P55347 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PKNOX1P55347 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PKNOX1P55347 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
PKNOX1P55347 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PKNOX1P55347 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PKNOX1P55347 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
PKNOX1P55347 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
PKNOX1P55347 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PKNOX1P55347 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PKNOX1P55347 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
PKNOX1P55347 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PKNOX1P55347 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PKNOX1P55347 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
PKNOX1P55347 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PKNOX1P55347 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.49■□□□□ 0.07
PKNOX1P55347 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PKNOX1P55347 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PKNOX1P55347 OR2I1P-210ENST00000642037 4691 ntBASIC15.49■□□□□ 0.07
PKNOX1P55347 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
PKNOX1P55347 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PKNOX1P55347 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PKNOX1P55347 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PKNOX1P55347 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PKNOX1P55347 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PKNOX1P55347 MIR346-201ENST00000362234 95 ntBASIC15.49■□□□□ 0.07
PKNOX1P55347 HLA-H-201ENST00000383620 1096 ntBASIC15.49■□□□□ 0.07
PKNOX1P55347 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PKNOX1P55347 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC15.49■□□□□ 0.07
PKNOX1P55347 ADH5P3-201ENST00000433842 1137 ntBASIC15.49■□□□□ 0.07
PKNOX1P55347 FAM58CP-201ENST00000435741 640 ntBASIC15.49■□□□□ 0.07
PKNOX1P55347 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PKNOX1P55347 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.49■□□□□ 0.07
PKNOX1P55347 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.49■□□□□ 0.07
PKNOX1P55347 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC15.49■□□□□ 0.07
PKNOX1P55347 MIR4313-201ENST00000580760 101 ntBASIC15.49■□□□□ 0.07
PKNOX1P55347 AC120114.3-201ENST00000611923 658 ntBASIC15.49■□□□□ 0.07
PKNOX1P55347 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC15.49■□□□□ 0.07
PKNOX1P55347 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
PKNOX1P55347 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PKNOX1P55347 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
PKNOX1P55347 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
PKNOX1P55347 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
PKNOX1P55347 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC15.49■□□□□ 0.07
PKNOX1P55347 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC15.49■□□□□ 0.07
PKNOX1P55347 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
PKNOX1P55347 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PKNOX1P55347 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PKNOX1P55347 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.49■□□□□ 0.07
PKNOX1P55347 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
PKNOX1P55347 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC15.49■□□□□ 0.07
PKNOX1P55347 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PKNOX1P55347 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
PKNOX1P55347 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PKNOX1P55347 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
PKNOX1P55347 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.48■□□□□ 0.07
PKNOX1P55347 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PKNOX1P55347 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
PKNOX1P55347 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
PKNOX1P55347 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC15.48■□□□□ 0.07
PKNOX1P55347 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PKNOX1P55347 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC15.48■□□□□ 0.07
PKNOX1P55347 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.48■□□□□ 0.07
PKNOX1P55347 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PKNOX1P55347 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
PKNOX1P55347 AC007292.2-201ENST00000593524 1812 ntBASIC15.48■□□□□ 0.07
PKNOX1P55347 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
PKNOX1P55347 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PKNOX1P55347 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PKNOX1P55347 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
PKNOX1P55347 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PKNOX1P55347 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PKNOX1P55347 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PKNOX1P55347 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PKNOX1P55347 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC15.48■□□□□ 0.07
PKNOX1P55347 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
PKNOX1P55347 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.48■□□□□ 0.07
PKNOX1P55347 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC15.48■□□□□ 0.07
PKNOX1P55347 AL139010.1-201ENST00000454878 894 ntBASIC15.48■□□□□ 0.07
PKNOX1P55347 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC15.48■□□□□ 0.07
PKNOX1P55347 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC15.48■□□□□ 0.07
PKNOX1P55347 KRT8P23-201ENST00000560090 1207 ntBASIC15.48■□□□□ 0.07
PKNOX1P55347 AC243562.1-201ENST00000560672 389 ntBASIC15.48■□□□□ 0.07
PKNOX1P55347 AP000842.3-202ENST00000569238 1080 ntBASIC15.48■□□□□ 0.07
PKNOX1P55347 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PKNOX1P55347 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.48■□□□□ 0.07
PKNOX1P55347 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.48■□□□□ 0.07
PKNOX1P55347 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC15.48■□□□□ 0.07
PKNOX1P55347 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
PKNOX1P55347 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.48■□□□□ 0.07
PKNOX1P55347 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
PKNOX1P55347 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.48■□□□□ 0.07
PKNOX1P55347 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
PKNOX1P55347 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
PKNOX1P55347 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PKNOX1P55347 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PKNOX1P55347 AC018892.3-201ENST00000623986 2499 ntBASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms