Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC12.94□□□□□ -0.34
CDX1P47902 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 CICP23-201ENST00000605013 2741 ntBASIC12.94□□□□□ -0.34
CDX1P47902 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC12.94□□□□□ -0.34
CDX1P47902 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC12.94□□□□□ -0.34
CDX1P47902 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC12.94□□□□□ -0.34
CDX1P47902 AC232323.1-201ENST00000540724 2099 ntBASIC12.94□□□□□ -0.34
CDX1P47902 REXO1L5P-201ENST00000622260 2098 ntBASIC12.94□□□□□ -0.34
CDX1P47902 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC12.94□□□□□ -0.34
CDX1P47902 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC12.94□□□□□ -0.34
CDX1P47902 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC12.94□□□□□ -0.34
CDX1P47902 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC12.94□□□□□ -0.34
CDX1P47902 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC12.94□□□□□ -0.34
CDX1P47902 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
CDX1P47902 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC12.94□□□□□ -0.34
CDX1P47902 KRT8P23-201ENST00000560090 1207 ntBASIC12.94□□□□□ -0.34
CDX1P47902 AL135744.1-201ENST00000565098 629 ntBASIC12.94□□□□□ -0.34
CDX1P47902 SIGLEC29P-201ENST00000599873 1114 ntBASIC12.94□□□□□ -0.34
CDX1P47902 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC12.94□□□□□ -0.34
CDX1P47902 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 SUPT20HL2-201ENST00000486479 2409 ntBASIC12.94□□□□□ -0.34
CDX1P47902 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC12.94□□□□□ -0.34
CDX1P47902 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC12.94□□□□□ -0.34
CDX1P47902 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC12.94□□□□□ -0.34
CDX1P47902 ING5-213ENST00000636051 4199 ntTSL 5 BASIC12.94□□□□□ -0.34
CDX1P47902 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
CDX1P47902 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
CDX1P47902 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CDX1P47902 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
CDX1P47902 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CDX1P47902 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC12.93□□□□□ -0.34
CDX1P47902 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CDX1P47902 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CDX1P47902 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
CDX1P47902 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CDX1P47902 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC12.93□□□□□ -0.34
CDX1P47902 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
CDX1P47902 ME2P1-201ENST00000426028 1970 ntBASIC12.93□□□□□ -0.34
CDX1P47902 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CDX1P47902 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CDX1P47902 CD99-202ENST00000381180 530 ntTSL 2 BASIC12.93□□□□□ -0.34
CDX1P47902 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC12.93□□□□□ -0.34
CDX1P47902 AL592309.1-201ENST00000443127 649 ntBASIC12.93□□□□□ -0.34
CDX1P47902 AC079140.1-201ENST00000508039 487 ntBASIC12.93□□□□□ -0.34
CDX1P47902 KRT8P48-201ENST00000515599 1220 ntBASIC12.93□□□□□ -0.34
CDX1P47902 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
CDX1P47902 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC12.93□□□□□ -0.34
CDX1P47902 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CDX1P47902 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC12.93□□□□□ -0.34
CDX1P47902 AC243562.1-201ENST00000560672 389 ntBASIC12.93□□□□□ -0.34
CDX1P47902 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
CDX1P47902 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
CDX1P47902 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC12.93□□□□□ -0.34
CDX1P47902 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
CDX1P47902 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC12.93□□□□□ -0.34
CDX1P47902 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
CDX1P47902 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CDX1P47902 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC12.93□□□□□ -0.34
CDX1P47902 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC12.93□□□□□ -0.34
CDX1P47902 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
CDX1P47902 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
CDX1P47902 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC12.93□□□□□ -0.34
CDX1P47902 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CDX1P47902 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC12.93□□□□□ -0.34
CDX1P47902 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC12.93□□□□□ -0.34
CDX1P47902 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CDX1P47902 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CDX1P47902 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CDX1P47902 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
CDX1P47902 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CDX1P47902 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CDX1P47902 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC12.93□□□□□ -0.34
CDX1P47902 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CDX1P47902 WARS-232ENST00000556645 2508 ntTSL 5 BASIC12.93□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms