Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC20.54■□□□□ 0.88
HOXC9P31274 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC9P31274 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC9P31274 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC9P31274 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC9P31274 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC9P31274 MIR663B-201ENST00000408361 115 ntBASIC20.54■□□□□ 0.88
HOXC9P31274 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC20.54■□□□□ 0.88
HOXC9P31274 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC20.54■□□□□ 0.88
HOXC9P31274 AC004898.1-201ENST00000451057 766 ntBASIC20.54■□□□□ 0.88
HOXC9P31274 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC20.54■□□□□ 0.88
HOXC9P31274 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC20.54■□□□□ 0.88
HOXC9P31274 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
HOXC9P31274 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC20.54■□□□□ 0.88
HOXC9P31274 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
HOXC9P31274 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC20.54■□□□□ 0.88
HOXC9P31274 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC9P31274 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC9P31274 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC9P31274 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC9P31274 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
HOXC9P31274 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC9P31274 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC20.54■□□□□ 0.88
HOXC9P31274 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC9P31274 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC20.54■□□□□ 0.88
HOXC9P31274 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC9P31274 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
HOXC9P31274 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC9P31274 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC9P31274 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC9P31274 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
HOXC9P31274 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC9P31274 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC9P31274 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
HOXC9P31274 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC9P31274 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC9P31274 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
HOXC9P31274 ACE-203ENST00000413513 2237 ntTSL 2 BASIC20.53■□□□□ 0.88
HOXC9P31274 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC9P31274 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC9P31274 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
HOXC9P31274 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC20.53■□□□□ 0.88
HOXC9P31274 KRTAP10-13P-201ENST00000412914 571 ntBASIC20.53■□□□□ 0.88
HOXC9P31274 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC20.53■□□□□ 0.88
HOXC9P31274 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC20.53■□□□□ 0.88
HOXC9P31274 HSPB1P2-201ENST00000448722 546 ntBASIC20.53■□□□□ 0.88
HOXC9P31274 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC9P31274 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC20.53■□□□□ 0.88
HOXC9P31274 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC20.53■□□□□ 0.88
HOXC9P31274 AP003171.2-201ENST00000528208 925 ntBASIC20.53■□□□□ 0.88
HOXC9P31274 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
HOXC9P31274 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
HOXC9P31274 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC20.53■□□□□ 0.88
HOXC9P31274 AL645728.2-202ENST00000641679 227 ntBASIC20.53■□□□□ 0.88
HOXC9P31274 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC9P31274 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC9P31274 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC9P31274 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC9P31274 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC9P31274 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC9P31274 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC9P31274 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC9P31274 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
HOXC9P31274 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC20.53■□□□□ 0.88
HOXC9P31274 HR-201ENST00000312841 5351 ntTSL 5 BASIC20.53■□□□□ 0.88
HOXC9P31274 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC9P31274 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC20.53■□□□□ 0.88
HOXC9P31274 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC20.52■□□□□ 0.88
HOXC9P31274 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC20.52■□□□□ 0.88
HOXC9P31274 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC9P31274 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC9P31274 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC9P31274 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC20.52■□□□□ 0.88
HOXC9P31274 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC9P31274 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
HOXC9P31274 SNX21-203ENST00000372541 771 ntTSL 2 BASIC20.52■□□□□ 0.88
HOXC9P31274 POM121L8P-201ENST00000417732 1281 ntBASIC20.52■□□□□ 0.88
HOXC9P31274 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC20.52■□□□□ 0.88
HOXC9P31274 POM121L9P-203ENST00000441984 1285 ntBASIC20.52■□□□□ 0.88
HOXC9P31274 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC20.52■□□□□ 0.88
HOXC9P31274 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC20.52■□□□□ 0.88
HOXC9P31274 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC20.52■□□□□ 0.88
HOXC9P31274 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC20.52■□□□□ 0.88
HOXC9P31274 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC9P31274 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC9P31274 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
HOXC9P31274 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC9P31274 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC9P31274 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC9P31274 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC9P31274 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
HOXC9P31274 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
HOXC9P31274 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
HOXC9P31274 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
HOXC9P31274 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
HOXC9P31274 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HOXC9P31274 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HOXC9P31274 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
HOXC9P31274 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC20.51■□□□□ 0.87
HOXC9P31274 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms