Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AC079140.1-201ENST00000508039 487 ntBASIC15.88■□□□□ 0.13
PTPN4P29074 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC15.88■□□□□ 0.13
PTPN4P29074 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN4P29074 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN4P29074 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN4P29074 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.88■□□□□ 0.13
PTPN4P29074 AL135744.1-201ENST00000565098 629 ntBASIC15.88■□□□□ 0.13
PTPN4P29074 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
PTPN4P29074 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
PTPN4P29074 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
PTPN4P29074 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN4P29074 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN4P29074 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
PTPN4P29074 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN4P29074 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
PTPN4P29074 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN4P29074 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
PTPN4P29074 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
PTPN4P29074 AC091951.1-201ENST00000512854 2465 ntBASIC15.88■□□□□ 0.13
PTPN4P29074 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.88■□□□□ 0.13
PTPN4P29074 AC008677.1-201ENST00000519230 1561 ntBASIC15.87■□□□□ 0.13
PTPN4P29074 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC15.87■□□□□ 0.13
PTPN4P29074 PARN-202ENST00000420015 2360 ntTSL 2 BASIC15.87■□□□□ 0.13
PTPN4P29074 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.87■□□□□ 0.13
PTPN4P29074 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC15.87■□□□□ 0.13
PTPN4P29074 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN4P29074 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN4P29074 COCH-203ENST00000460581 2688 ntTSL 2 BASIC15.87■□□□□ 0.13
PTPN4P29074 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
PTPN4P29074 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
PTPN4P29074 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN4P29074 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
PTPN4P29074 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN4P29074 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN4P29074 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN4P29074 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN4P29074 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN4P29074 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN4P29074 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN4P29074 HLA-DRB6-201ENST00000411500 1235 ntBASIC15.87■□□□□ 0.13
PTPN4P29074 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN4P29074 WDR53-203ENST00000429115 683 ntTSL 2 BASIC15.87■□□□□ 0.13
PTPN4P29074 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC15.87■□□□□ 0.13
PTPN4P29074 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
PTPN4P29074 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN4P29074 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC15.87■□□□□ 0.13
PTPN4P29074 AC243562.1-201ENST00000560672 389 ntBASIC15.87■□□□□ 0.13
PTPN4P29074 SPCS2P1-201ENST00000561636 679 ntBASIC15.87■□□□□ 0.13
PTPN4P29074 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.87■□□□□ 0.13
PTPN4P29074 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.87■□□□□ 0.13
PTPN4P29074 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN4P29074 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC15.87■□□□□ 0.13
PTPN4P29074 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN4P29074 AC005912.2-201ENST00000619492 2400 ntBASIC15.87■□□□□ 0.13
PTPN4P29074 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC15.87■□□□□ 0.13
PTPN4P29074 GPI-205ENST00000586425 1799 ntTSL 5 BASIC15.87■□□□□ 0.13
PTPN4P29074 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
PTPN4P29074 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
PTPN4P29074 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN4P29074 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
PTPN4P29074 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
PTPN4P29074 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC15.87■□□□□ 0.13
PTPN4P29074 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN4P29074 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN4P29074 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN4P29074 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN4P29074 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN4P29074 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC15.86■□□□□ 0.13
PTPN4P29074 AL353732.1-201ENST00000569618 1459 ntBASIC15.86■□□□□ 0.13
PTPN4P29074 FLJ16779-201ENST00000612722 7638 ntBASIC15.86■□□□□ 0.13
PTPN4P29074 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN4P29074 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN4P29074 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
PTPN4P29074 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
PTPN4P29074 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN4P29074 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN4P29074 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN4P29074 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN4P29074 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN4P29074 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN4P29074 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN4P29074 CD99-202ENST00000381180 530 ntTSL 2 BASIC15.86■□□□□ 0.13
PTPN4P29074 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC15.86■□□□□ 0.13
PTPN4P29074 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC15.86■□□□□ 0.13
PTPN4P29074 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN4P29074 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC15.86■□□□□ 0.13
PTPN4P29074 AC067863.1-201ENST00000494933 530 ntBASIC15.86■□□□□ 0.13
PTPN4P29074 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN4P29074 TSFM-210ENST00000550559 897 ntTSL 5 BASIC15.86■□□□□ 0.13
PTPN4P29074 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC15.86■□□□□ 0.13
PTPN4P29074 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN4P29074 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC15.86■□□□□ 0.13
PTPN4P29074 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC15.86■□□□□ 0.13
PTPN4P29074 AC015911.4-201ENST00000588022 1070 ntBASIC15.86■□□□□ 0.13
PTPN4P29074 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC15.86■□□□□ 0.13
PTPN4P29074 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC15.86■□□□□ 0.13
PTPN4P29074 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN4P29074 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
PTPN4P29074 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
PTPN4P29074 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms