Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 AC254562.1-201ENST00000417586 456 ntBASIC12.05□□□□□ -0.48
HLA-DMBP28068 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 AC142381.1-201ENST00000426099 345 ntBASIC12.05□□□□□ -0.48
HLA-DMBP28068 CNN2P11-201ENST00000429351 262 ntBASIC12.05□□□□□ -0.48
HLA-DMBP28068 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 AC024267.1-201ENST00000582320 895 ntBASIC12.05□□□□□ -0.48
HLA-DMBP28068 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 AC092902.6-201ENST00000641783 218 ntBASIC12.05□□□□□ -0.48
HLA-DMBP28068 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC12.05□□□□□ -0.48
HLA-DMBP28068 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DMBP28068 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 TCAF2P1-201ENST00000291129 2421 ntBASIC12.04□□□□□ -0.48
HLA-DMBP28068 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 KRT8P48-201ENST00000515599 1220 ntBASIC12.04□□□□□ -0.48
HLA-DMBP28068 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DMBP28068 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 AC008267.7-201ENST00000624570 1194 ntBASIC12.04□□□□□ -0.48
HLA-DMBP28068 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
HLA-DMBP28068 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms