Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ISCA2P1-201ENST00000425548 448 ntBASIC19.28■□□□□ 0.68
COL5A3P25940 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC19.28■□□□□ 0.68
COL5A3P25940 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL5A3P25940 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL5A3P25940 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL5A3P25940 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC19.28■□□□□ 0.68
COL5A3P25940 AC024909.3-201ENST00000611513 2257 ntBASIC19.28■□□□□ 0.68
COL5A3P25940 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL5A3P25940 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
COL5A3P25940 AL157414.3-201ENST00000624276 1954 ntBASIC19.28■□□□□ 0.68
COL5A3P25940 AC006480.2-201ENST00000609770 1337 ntBASIC19.28■□□□□ 0.68
COL5A3P25940 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL5A3P25940 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC19.28■□□□□ 0.68
COL5A3P25940 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
COL5A3P25940 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
COL5A3P25940 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL5A3P25940 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL5A3P25940 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL5A3P25940 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL5A3P25940 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL5A3P25940 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL5A3P25940 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL5A3P25940 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL5A3P25940 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC19.28■□□□□ 0.68
COL5A3P25940 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC19.28■□□□□ 0.68
COL5A3P25940 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL5A3P25940 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL5A3P25940 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL5A3P25940 INE2-201ENST00000630399 1874 ntBASIC19.28■□□□□ 0.68
COL5A3P25940 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL5A3P25940 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL5A3P25940 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL5A3P25940 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
COL5A3P25940 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
COL5A3P25940 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL5A3P25940 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC19.27■□□□□ 0.68
COL5A3P25940 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC19.27■□□□□ 0.68
COL5A3P25940 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL5A3P25940 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL5A3P25940 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
COL5A3P25940 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL5A3P25940 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
COL5A3P25940 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL5A3P25940 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL5A3P25940 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC19.27■□□□□ 0.68
COL5A3P25940 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL5A3P25940 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
COL5A3P25940 AC073150.1-201ENST00000450406 1084 ntBASIC19.27■□□□□ 0.68
COL5A3P25940 AC021723.1-201ENST00000486306 515 ntBASIC19.27■□□□□ 0.68
COL5A3P25940 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC19.27■□□□□ 0.68
COL5A3P25940 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC19.27■□□□□ 0.68
COL5A3P25940 MEG3_2.1-201ENST00000611456 105 ntBASIC19.27■□□□□ 0.68
COL5A3P25940 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC19.27■□□□□ 0.68
COL5A3P25940 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL5A3P25940 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL5A3P25940 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL5A3P25940 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL5A3P25940 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL5A3P25940 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL5A3P25940 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
COL5A3P25940 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL5A3P25940 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL5A3P25940 HNRNPA1P36-201ENST00000521313 955 ntBASIC19.26■□□□□ 0.67
COL5A3P25940 MIR4754-201ENST00000582477 89 ntBASIC19.26■□□□□ 0.67
COL5A3P25940 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC19.26■□□□□ 0.67
COL5A3P25940 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC19.26■□□□□ 0.67
COL5A3P25940 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC19.26■□□□□ 0.67
COL5A3P25940 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC19.26■□□□□ 0.67
COL5A3P25940 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
COL5A3P25940 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
COL5A3P25940 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL5A3P25940 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL5A3P25940 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC19.26■□□□□ 0.67
COL5A3P25940 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC19.26■□□□□ 0.67
COL5A3P25940 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC19.26■□□□□ 0.67
COL5A3P25940 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL5A3P25940 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL5A3P25940 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC19.26■□□□□ 0.67
COL5A3P25940 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL5A3P25940 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
COL5A3P25940 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A3P25940 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A3P25940 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A3P25940 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A3P25940 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A3P25940 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A3P25940 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
COL5A3P25940 MBP-227ENST00000526111 581 ntTSL 4 BASIC19.25■□□□□ 0.67
COL5A3P25940 NPM1P43-201ENST00000558669 786 ntBASIC19.25■□□□□ 0.67
COL5A3P25940 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
COL5A3P25940 AL136301.1-201ENST00000615830 422 ntBASIC19.25■□□□□ 0.67
COL5A3P25940 AL136295.7-201ENST00000619226 1200 ntBASIC19.25■□□□□ 0.67
COL5A3P25940 AC106820.2-201ENST00000563775 3264 ntBASIC19.25■□□□□ 0.67
COL5A3P25940 FKBP4P6-201ENST00000457486 1332 ntBASIC19.25■□□□□ 0.67
COL5A3P25940 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC19.25■□□□□ 0.67
COL5A3P25940 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A3P25940 AL603832.2-201ENST00000566195 2125 ntBASIC19.25■□□□□ 0.67
COL5A3P25940 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A3P25940 E2F3P2-201ENST00000447755 1422 ntBASIC19.25■□□□□ 0.67
COL5A3P25940 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms