Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGA1P17096 FAM86MP-201ENST00000340703 885 ntBASIC16.14■□□□□ 0.17
HMGA1P17096 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC16.14■□□□□ 0.17
HMGA1P17096 ACTBP8-201ENST00000403258 1108 ntBASIC16.14■□□□□ 0.17
HMGA1P17096 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGA1P17096 MIR1908-201ENST00000410394 80 ntBASIC16.14■□□□□ 0.17
HMGA1P17096 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC16.14■□□□□ 0.17
HMGA1P17096 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC16.14■□□□□ 0.17
HMGA1P17096 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC16.14■□□□□ 0.17
HMGA1P17096 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.14■□□□□ 0.17
HMGA1P17096 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC16.14■□□□□ 0.17
HMGA1P17096 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HMGA1P17096 AC079316.1-201ENST00000548397 411 ntBASIC16.14■□□□□ 0.17
HMGA1P17096 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC16.14■□□□□ 0.17
HMGA1P17096 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGA1P17096 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC16.14■□□□□ 0.17
HMGA1P17096 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC16.14■□□□□ 0.17
HMGA1P17096 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC16.14■□□□□ 0.17
HMGA1P17096 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGA1P17096 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC16.14■□□□□ 0.17
HMGA1P17096 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGA1P17096 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGA1P17096 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGA1P17096 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
HMGA1P17096 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.14■□□□□ 0.17
HMGA1P17096 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HMGA1P17096 TUBB1P2-201ENST00000422712 1306 ntBASIC16.14■□□□□ 0.17
HMGA1P17096 TUBB1P1-201ENST00000503144 1300 ntBASIC16.14■□□□□ 0.17
HMGA1P17096 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC16.14■□□□□ 0.17
HMGA1P17096 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGA1P17096 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGA1P17096 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
HMGA1P17096 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
HMGA1P17096 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGA1P17096 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC16.14■□□□□ 0.17
HMGA1P17096 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGA1P17096 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGA1P17096 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC16.13■□□□□ 0.17
HMGA1P17096 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
HMGA1P17096 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
HMGA1P17096 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC16.13■□□□□ 0.17
HMGA1P17096 AC007787.1-201ENST00000588095 1583 ntBASIC16.13■□□□□ 0.17
HMGA1P17096 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGA1P17096 AC148477.4-201ENST00000613430 1793 ntBASIC16.13■□□□□ 0.17
HMGA1P17096 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
HMGA1P17096 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HMGA1P17096 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGA1P17096 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.13■□□□□ 0.17
HMGA1P17096 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGA1P17096 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGA1P17096 AC006001.1-201ENST00000325130 474 ntBASIC16.13■□□□□ 0.17
HMGA1P17096 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
HMGA1P17096 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HMGA1P17096 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGA1P17096 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC16.13■□□□□ 0.17
HMGA1P17096 FAM197Y7-201ENST00000432892 766 ntBASIC16.13■□□□□ 0.17
HMGA1P17096 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC16.13■□□□□ 0.17
HMGA1P17096 AC114812.1-204ENST00000449669 728 ntBASIC16.13■□□□□ 0.17
HMGA1P17096 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HMGA1P17096 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC16.13■□□□□ 0.17
HMGA1P17096 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
HMGA1P17096 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HMGA1P17096 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
HMGA1P17096 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC16.13■□□□□ 0.17
HMGA1P17096 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC16.13■□□□□ 0.17
HMGA1P17096 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
HMGA1P17096 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC16.13■□□□□ 0.17
HMGA1P17096 AC132938.4-201ENST00000623835 848 ntBASIC16.13■□□□□ 0.17
HMGA1P17096 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC16.13■□□□□ 0.17
HMGA1P17096 AC008687.7-202ENST00000637404 953 ntBASIC16.13■□□□□ 0.17
HMGA1P17096 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
HMGA1P17096 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16.13■□□□□ 0.17
HMGA1P17096 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGA1P17096 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGA1P17096 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGA1P17096 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGA1P17096 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
HMGA1P17096 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGA1P17096 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HMGA1P17096 AP005117.1-202ENST00000581724 1908 ntBASIC16.13■□□□□ 0.17
HMGA1P17096 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC16.13■□□□□ 0.17
HMGA1P17096 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGA1P17096 AL139384.1-201ENST00000612143 3047 ntBASIC16.13■□□□□ 0.17
HMGA1P17096 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGA1P17096 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC16.13■□□□□ 0.17
HMGA1P17096 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGA1P17096 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
HMGA1P17096 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC16.12■□□□□ 0.17
HMGA1P17096 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGA1P17096 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.12■□□□□ 0.17
HMGA1P17096 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
HMGA1P17096 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
HMGA1P17096 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.12■□□□□ 0.17
HMGA1P17096 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGA1P17096 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGA1P17096 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HMGA1P17096 GUK1-206ENST00000366723 845 ntTSL 5 BASIC16.12■□□□□ 0.17
HMGA1P17096 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGA1P17096 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGA1P17096 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms