Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
COL2A1P02458 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
COL2A1P02458 TNRC18P3-201ENST00000441896 2691 ntBASIC18.02■□□□□ 0.47
COL2A1P02458 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
COL2A1P02458 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
COL2A1P02458 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
COL2A1P02458 STK33-217ENST00000534493 1895 ntTSL 2 BASIC18.02■□□□□ 0.47
COL2A1P02458 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
COL2A1P02458 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
COL2A1P02458 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL2A1P02458 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL2A1P02458 KRTAP10-13P-201ENST00000412914 571 ntBASIC18.01■□□□□ 0.47
COL2A1P02458 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL2A1P02458 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
COL2A1P02458 MESTP3-201ENST00000503460 968 ntBASIC18.01■□□□□ 0.47
COL2A1P02458 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC18.01■□□□□ 0.47
COL2A1P02458 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC18.01■□□□□ 0.47
COL2A1P02458 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC18.01■□□□□ 0.47
COL2A1P02458 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC18.01■□□□□ 0.47
COL2A1P02458 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
COL2A1P02458 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC18.01■□□□□ 0.47
COL2A1P02458 AC244157.2-201ENST00000616239 1006 ntBASIC18.01■□□□□ 0.47
COL2A1P02458 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
COL2A1P02458 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL2A1P02458 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL2A1P02458 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL2A1P02458 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC18.01■□□□□ 0.47
COL2A1P02458 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
COL2A1P02458 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL2A1P02458 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL2A1P02458 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL2A1P02458 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL2A1P02458 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC18.01■□□□□ 0.47
COL2A1P02458 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL2A1P02458 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL2A1P02458 CLUHP2-201ENST00000426660 1303 ntBASIC18.01■□□□□ 0.47
COL2A1P02458 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.01■□□□□ 0.47
COL2A1P02458 AC138028.6-201ENST00000616106 1482 ntBASIC18.01■□□□□ 0.47
COL2A1P02458 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL2A1P02458 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL2A1P02458 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL2A1P02458 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC18.01■□□□□ 0.47
COL2A1P02458 CSH2-202ENST00000345366 598 ntTSL 5 BASIC18.01■□□□□ 0.47
COL2A1P02458 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL2A1P02458 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC18.01■□□□□ 0.47
COL2A1P02458 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC18.01■□□□□ 0.47
COL2A1P02458 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC18.01■□□□□ 0.47
COL2A1P02458 CHMP1AP1-201ENST00000445563 662 ntBASIC18.01■□□□□ 0.47
COL2A1P02458 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL2A1P02458 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC18.01■□□□□ 0.47
COL2A1P02458 RNA5SP423-201ENST00000517127 109 ntBASIC18.01■□□□□ 0.47
COL2A1P02458 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL2A1P02458 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL2A1P02458 RHOQP1-201ENST00000555758 579 ntBASIC18.01■□□□□ 0.47
COL2A1P02458 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL2A1P02458 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC18.01■□□□□ 0.47
COL2A1P02458 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC18.01■□□□□ 0.47
COL2A1P02458 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC18.01■□□□□ 0.47
COL2A1P02458 AC104982.3-201ENST00000581995 514 ntBASIC18.01■□□□□ 0.47
COL2A1P02458 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
COL2A1P02458 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.01■□□□□ 0.47
COL2A1P02458 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL2A1P02458 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL2A1P02458 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL2A1P02458 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18■□□□□ 0.47
COL2A1P02458 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
COL2A1P02458 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC18■□□□□ 0.47
COL2A1P02458 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL2A1P02458 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC18■□□□□ 0.47
COL2A1P02458 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC18■□□□□ 0.47
COL2A1P02458 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL2A1P02458 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL2A1P02458 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
COL2A1P02458 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC18■□□□□ 0.47
COL2A1P02458 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL2A1P02458 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL2A1P02458 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL2A1P02458 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
COL2A1P02458 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC18■□□□□ 0.47
COL2A1P02458 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC18■□□□□ 0.47
COL2A1P02458 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC18■□□□□ 0.47
COL2A1P02458 AL354877.1-201ENST00000424412 413 ntBASIC18■□□□□ 0.47
COL2A1P02458 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC18■□□□□ 0.47
COL2A1P02458 HIST2H2BB-201ENST00000449108 381 ntBASIC18■□□□□ 0.47
COL2A1P02458 ARTN-209ENST00000479128 471 ntTSL 3 BASIC18■□□□□ 0.47
COL2A1P02458 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC18■□□□□ 0.47
COL2A1P02458 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC18■□□□□ 0.47
COL2A1P02458 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL2A1P02458 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL2A1P02458 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
COL2A1P02458 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL2A1P02458 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18■□□□□ 0.47
COL2A1P02458 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL2A1P02458 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL2A1P02458 AC105250.1-201ENST00000509378 2057 ntBASIC18■□□□□ 0.47
COL2A1P02458 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
COL2A1P02458 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC17.99■□□□□ 0.47
COL2A1P02458 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
COL2A1P02458 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL2A1P02458 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms