Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.3■□□□□ 0.04
LDLRP01130 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDLRP01130 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
LDLRP01130 BAD-202ENST00000394531 631 ntTSL 3 BASIC15.3■□□□□ 0.04
LDLRP01130 GRAP-202ENST00000395635 834 ntTSL 2 BASIC15.3■□□□□ 0.04
LDLRP01130 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
LDLRP01130 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC15.3■□□□□ 0.04
LDLRP01130 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.3■□□□□ 0.04
LDLRP01130 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC15.3■□□□□ 0.04
LDLRP01130 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC15.3■□□□□ 0.04
LDLRP01130 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.3■□□□□ 0.04
LDLRP01130 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC15.3■□□□□ 0.04
LDLRP01130 SPDYE11-202ENST00000450699 704 ntBASIC15.3■□□□□ 0.04
LDLRP01130 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
LDLRP01130 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC15.3■□□□□ 0.04
LDLRP01130 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LDLRP01130 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC15.3■□□□□ 0.04
LDLRP01130 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC15.3■□□□□ 0.04
LDLRP01130 KRT8P48-201ENST00000515599 1220 ntBASIC15.3■□□□□ 0.04
LDLRP01130 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
LDLRP01130 SPDYE9P-201ENST00000570642 692 ntBASIC15.3■□□□□ 0.04
LDLRP01130 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC15.3■□□□□ 0.04
LDLRP01130 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC15.3■□□□□ 0.04
LDLRP01130 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC15.3■□□□□ 0.04
LDLRP01130 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC15.3■□□□□ 0.04
LDLRP01130 SPDYE10P-202ENST00000612005 668 ntBASIC15.3■□□□□ 0.04
LDLRP01130 SPDYE8P-202ENST00000612377 668 ntBASIC15.3■□□□□ 0.04
LDLRP01130 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC15.3■□□□□ 0.04
LDLRP01130 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC15.3■□□□□ 0.04
LDLRP01130 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDLRP01130 HFE2-206ENST00000634927 506 ntTSL 4 BASIC15.3■□□□□ 0.04
LDLRP01130 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC15.3■□□□□ 0.04
LDLRP01130 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDLRP01130 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDLRP01130 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDLRP01130 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC15.3■□□□□ 0.04
LDLRP01130 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
LDLRP01130 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LDLRP01130 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
LDLRP01130 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC15.29■□□□□ 0.04
LDLRP01130 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LDLRP01130 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.29■□□□□ 0.04
LDLRP01130 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDLRP01130 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LDLRP01130 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
LDLRP01130 AC005622.1-201ENST00000636801 1703 ntBASIC15.29■□□□□ 0.04
LDLRP01130 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC15.29■□□□□ 0.04
LDLRP01130 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
LDLRP01130 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC15.29■□□□□ 0.04
LDLRP01130 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDLRP01130 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDLRP01130 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDLRP01130 CICP24-201ENST00000605464 2705 ntBASIC15.29■□□□□ 0.04
LDLRP01130 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LDLRP01130 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15.29■□□□□ 0.04
LDLRP01130 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
LDLRP01130 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDLRP01130 OR8S1-201ENST00000310194 1080 ntBASIC15.29■□□□□ 0.04
LDLRP01130 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC15.29■□□□□ 0.04
LDLRP01130 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDLRP01130 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDLRP01130 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC15.29■□□□□ 0.04
LDLRP01130 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
LDLRP01130 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC15.29■□□□□ 0.04
LDLRP01130 FALEC-201ENST00000416894 566 ntTSL 3 BASIC15.29■□□□□ 0.04
LDLRP01130 AC107890.1-201ENST00000422478 521 ntBASIC15.29■□□□□ 0.04
LDLRP01130 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC15.29■□□□□ 0.04
LDLRP01130 AL671277.1-201ENST00000429656 993 ntBASIC15.29■□□□□ 0.04
LDLRP01130 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC15.29■□□□□ 0.04
LDLRP01130 AL513480.1-201ENST00000451731 511 ntBASIC15.29■□□□□ 0.04
LDLRP01130 AP005018.1-201ENST00000525475 301 ntBASIC15.29■□□□□ 0.04
LDLRP01130 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC15.29■□□□□ 0.04
LDLRP01130 AL359881.2-201ENST00000602973 570 ntBASIC15.29■□□□□ 0.04
LDLRP01130 AP001059.3-201ENST00000619053 235 ntBASIC15.29■□□□□ 0.04
LDLRP01130 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
LDLRP01130 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDLRP01130 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDLRP01130 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC15.29■□□□□ 0.04
LDLRP01130 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LDLRP01130 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDLRP01130 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
LDLRP01130 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDLRP01130 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDLRP01130 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDLRP01130 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LDLRP01130 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
LDLRP01130 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LDLRP01130 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDLRP01130 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.28■□□□□ 0.04
LDLRP01130 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDLRP01130 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.28■□□□□ 0.04
LDLRP01130 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LDLRP01130 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
LDLRP01130 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
LDLRP01130 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDLRP01130 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDLRP01130 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
LDLRP01130 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDLRP01130 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDLRP01130 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms