Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 AC025678.2-201ENST00000562061 970 ntBASIC16.84■□□□□ 0.29
SIX2Q9NPC8 AC004449.1-201ENST00000564240 433 ntBASIC16.84■□□□□ 0.29
SIX2Q9NPC8 AC140878.1-201ENST00000565277 250 ntBASIC16.84■□□□□ 0.29
SIX2Q9NPC8 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 UBL5-208ENST00000593087 320 ntTSL 3 BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 MARS-233ENST00000628866 2583 ntTSL 5 BASIC16.84■□□□□ 0.29
SIX2Q9NPC8 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SIX2Q9NPC8 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.29
SIX2Q9NPC8 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SIX2Q9NPC8 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC16.83■□□□□ 0.29
SIX2Q9NPC8 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
SIX2Q9NPC8 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.83■□□□□ 0.29
SIX2Q9NPC8 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
SIX2Q9NPC8 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SIX2Q9NPC8 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC16.83■□□□□ 0.28
SIX2Q9NPC8 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SIX2Q9NPC8 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.28
SIX2Q9NPC8 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
SIX2Q9NPC8 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SIX2Q9NPC8 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SIX2Q9NPC8 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.83■□□□□ 0.28
SIX2Q9NPC8 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC16.83■□□□□ 0.28
SIX2Q9NPC8 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC16.83■□□□□ 0.28
SIX2Q9NPC8 RN7SL618P-201ENST00000477850 296 ntBASIC16.83■□□□□ 0.28
SIX2Q9NPC8 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SIX2Q9NPC8 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.83■□□□□ 0.28
SIX2Q9NPC8 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC16.83■□□□□ 0.28
SIX2Q9NPC8 AC097493.3-201ENST00000509725 367 ntBASIC16.83■□□□□ 0.28
SIX2Q9NPC8 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC16.83■□□□□ 0.28
SIX2Q9NPC8 AC069120.2-201ENST00000524091 540 ntBASIC16.83■□□□□ 0.28
SIX2Q9NPC8 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.83■□□□□ 0.28
SIX2Q9NPC8 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
SIX2Q9NPC8 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.83■□□□□ 0.28
SIX2Q9NPC8 LSM12-202ENST00000585388 942 ntTSL 3 BASIC16.83■□□□□ 0.28
SIX2Q9NPC8 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC16.83■□□□□ 0.28
SIX2Q9NPC8 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SIX2Q9NPC8 AC074044.1-201ENST00000609673 707 ntBASIC16.83■□□□□ 0.28
SIX2Q9NPC8 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
SIX2Q9NPC8 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
SIX2Q9NPC8 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
SIX2Q9NPC8 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 TK1-203ENST00000588734 1681 ntTSL 2 BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 TP73-209ENST00000603362 1668 ntTSL 5 BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 TOMM22P5-201ENST00000416399 439 ntBASIC16.82■□□□□ 0.28
SIX2Q9NPC8 AC107890.1-201ENST00000422478 521 ntBASIC16.82■□□□□ 0.28
SIX2Q9NPC8 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 AC027369.6-201ENST00000525520 931 ntBASIC16.82■□□□□ 0.28
SIX2Q9NPC8 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 AC044860.1-202ENST00000559481 777 ntBASIC16.82■□□□□ 0.28
SIX2Q9NPC8 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 AC079781.4-201ENST00000641908 219 ntBASIC16.82■□□□□ 0.28
SIX2Q9NPC8 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SIX2Q9NPC8 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SIX2Q9NPC8 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms