Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC19.99■□□□□ 0.79
CHMP4AQ9BY43 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CHMP4AQ9BY43 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC19.99■□□□□ 0.79
CHMP4AQ9BY43 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC19.99■□□□□ 0.79
CHMP4AQ9BY43 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC19.99■□□□□ 0.79
CHMP4AQ9BY43 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC19.99■□□□□ 0.79
CHMP4AQ9BY43 WASH4P-201ENST00000564273 1246 ntBASIC19.99■□□□□ 0.79
CHMP4AQ9BY43 AC009486.1-201ENST00000569860 813 ntBASIC19.99■□□□□ 0.79
CHMP4AQ9BY43 GPX4-206ENST00000588919 803 ntTSL 2 BASIC19.99■□□□□ 0.79
CHMP4AQ9BY43 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
CHMP4AQ9BY43 HADH-212ENST00000638621 741 ntTSL 5 BASIC19.99■□□□□ 0.79
CHMP4AQ9BY43 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHMP4AQ9BY43 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC19.99■□□□□ 0.79
CHMP4AQ9BY43 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHMP4AQ9BY43 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC19.99■□□□□ 0.79
CHMP4AQ9BY43 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC19.99■□□□□ 0.79
CHMP4AQ9BY43 AL365203.3-201ENST00000609742 2057 ntBASIC19.99■□□□□ 0.79
CHMP4AQ9BY43 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC19.99■□□□□ 0.79
CHMP4AQ9BY43 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHMP4AQ9BY43 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CHMP4AQ9BY43 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHMP4AQ9BY43 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHMP4AQ9BY43 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHMP4AQ9BY43 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 TEX30-203ENST00000376022 828 ntTSL 2 BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 ACTG1P3-201ENST00000431775 1114 ntBASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 INE1-201ENST00000456273 945 ntBASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 DRD5P1-201ENST00000456605 1438 ntBASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 DOC2GP-204ENST00000639052 2548 ntBASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
CHMP4AQ9BY43 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 POLL-217ENST00000628479 1953 ntTSL 5 BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 AC018695.7-201ENST00000624587 2492 ntBASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 NUS1P3-201ENST00000423502 862 ntBASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 GIMAP3P-201ENST00000495150 836 ntBASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 GAPDHP40-201ENST00000505218 1006 ntBASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 HNRNPA1P13-201ENST00000510646 963 ntBASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 AC124283.3-201ENST00000570869 594 ntBASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 PAM16-204ENST00000571941 674 ntTSL 3 BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 CU634019.7-201ENST00000624153 1185 ntBASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 FP236241.2-201ENST00000624906 1185 ntBASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 ABBA01031660.1-201ENST00000635219 756 ntBASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 AC010491.1-201ENST00000563101 2797 ntBASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
CHMP4AQ9BY43 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC19.96■□□□□ 0.79
CHMP4AQ9BY43 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms