Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.66■□□□□ 0.26
PAAF1Q9BRP4 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 PCDHA1-201ENST00000378133 2726 ntBASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 ACKR1-201ENST00000368121 1240 ntBASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 BRF1-202ENST00000379932 884 ntTSL 5 BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 SUN1-204ENST00000403868 978 ntTSL 2 BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 AP000812.2-201ENST00000538934 718 ntBASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 AL583810.1-201ENST00000553344 1045 ntBASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 AL391005.1-201ENST00000623953 2435 ntBASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.65■□□□□ 0.26
PAAF1Q9BRP4 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.64■□□□□ 0.26
PAAF1Q9BRP4 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 AC092658.1-201ENST00000505836 891 ntBASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 KSR1-207ENST00000578981 748 ntTSL 4 BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
PAAF1Q9BRP4 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 AC127383.1-201ENST00000444697 1800 ntBASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms